Genomes and Genes
Summary: A group of ALGAE, formerly considered FUNGI, whose exact taxonomic level is unsettled. Many consider Oomycetes (Oomycota) a phylum in the kingdom Stramenopila, or alternatively, as Pseudofungi in the phylum Heterokonta of the kingdom Chromista. They are morphologically similar to fungi but have no close phylogenetic relationship to them. Oomycetes are found in both fresh and salt water as well as in terrestrial environments. (Alexopoulos et al., Introductory Mycology, 4th ed, pp683-4). They produce flagellated, actively motile spores (zoospores) that are pathogenic to many crop plants and FISHES.
Publications275 found, 100 shown here
- Natural variation reveals key amino acids in a downy mildew effector that alters recognition specificity by an Arabidopsis resistance geneRebecca L Allen
Warwick HRI, Warwick University, Wellesbourne, Warwick CV35 9EF, UK
Mol Plant Pathol 9:511-23. 2008..Mutations in these three amino acids had no effect on the interaction of ATR13 with a resistance gene unlinked to RPP13, consistent with their critical role in determining RPP13-Nd recognition specificity...
- Host-parasite coevolutionary conflict between Arabidopsis and downy mildewRebecca L Allen
Warwick, HRI University of Warwick, Wellesbourne, Warwick, CV35 9EF, UK
Science 306:1957-60. 2004....
- Ancient class of translocated oomycete effectors targets the host nucleusSebastian Schornack
The Sainsbury Laboratory, John Innes Centre, Colney, Norwich NR4 7UH, United Kingdom
Proc Natl Acad Sci U S A 107:17421-6. 2010..CRN host translocation requires a conserved motif that is present in all examined plant pathogenic oomycetes, including the phylogenetically divergent species Aphanomyces euteiches that does not form haustoria, ..
- Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technologyJiao Wu
College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China
BMC Plant Biol 10:234. 2010..cv. Zuoshan-1. Our goal is to identify genes that are involved in resistance to grape DM disease...
- Engineered polyamine catabolism preinduces tolerance of tobacco to bacteria and oomycetesPanagiotis N Moschou
Department of Biology, University of Crete, Crete, 71409 Heraklion, Greece
Plant Physiol 149:1970-81. 2009..This strategy presents a novel approach for producing transgenic plants resistant to a broad spectrum of plant pathogens...
- The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groupsHoward S Judelson
Department of Plant Pathology and Microbiology, University of California, Riverside, California 92521, USA
BMC Genomics 11:700. 2010b>Oomycetes are a large group of economically and ecologically important species. Its most notorious member is Phytophthora infestans, the cause of the devastating potato late blight disease. The life cycle of P...
- Networks of WRKY transcription factors in defense signalingThomas Eulgem
Center for Plant Cell Biology, Department of Botany and Plant Sciences, University of California at Riverside, CA 92521, USA
Curr Opin Plant Biol 10:366-71. 2007..A key mechanism triggering strong immune responses appears to be based on the inactivation of defense-suppressing WRKY proteins...
- Two simplified fluorescent staining techniques to observe infection structures of the oomycete Plasmopara viticola in grapevine leaf tissuesAna María Díez-Navajas
Unité Mixte de Recherche 1131, Institut National de la Recherche Agronomique Université Louis Pasteur de Strasbourg, 28 rue de Herrlisheim, 68021 Colmar Cedex, France
Micron 38:680-3. 2007..We tested modifications of some parameters of the procedures to determine the most appropriate for high throughput analyses adapted to our pathosystem and equipment facilities...
- How do oomycete effectors interfere with plant life?Joost H M Stassen
Plant Microbe Interactions, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
Curr Opin Plant Biol 14:407-14. 2011..b>Oomycetes secrete effectors that can be active in the host's extracellular environment, for example inhibiting host ..
- Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of ArabidopsisJ M McDowell
Department of Biology, C B 3280 Coker Hall, University of North Carolina, Chapel Hill, North Carolina 27599 3280, USA
Plant Cell 10:1861-74. 1998..These observations indicate that NBS-LRR molecular evolution is driven by the same mechanisms that promote rapid sequence diversification among other genes involved in non-self-recognition...
- Oomycete-plant coevolution: recent advances and future prospectsMarco Thines
The Sainsbury Laboratory, Norwich NR4 7UH, United Kingdom
Curr Opin Plant Biol 13:427-33. 2010b>Oomycetes are a diverse group of eukaryotic organisms that have colonised many ecological niches; yet more than 60% of the known species are parasitic on plants...
- Insights from sequencing fungal and oomycete genomes: what can we learn about plant disease and the evolution of pathogenicity?Darren M Soanes
School of Biosciences, University of Exeter, Exeter EX4 4QD, UK
Plant Cell 19:3318-26. 2007
- General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine speciesMarianna Polesani
Department of Biotechnology, University of Verona, 37134 Verona, Italy
BMC Genomics 11:117. 2010..Natural sources of resistance from wild grapevine (Vitis) species are used in conventional breeding approaches, but the signals and effectors involved in resistance in this important crop species are not well understood...
- A molecular phylogeny of Phytophthora and related oomycetesD E Cooke
Scottish Crop Research Institute, Invergowrie, Dundee, United Kingdom
Fungal Genet Biol 30:17-32. 2000Phylogenetic relationships among 50 Phytophthora species and between Phytophthora and other oomycetes were examined on the basis of the ITS sequences of genomic rDNA...
- Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene familiesMichael F Seidl
Theoretical Biology and Bioinformatics, Department of Biology, Utrecht University, Utrecht, The Netherlands
Genome Biol Evol 4:199-211. 2012The taxonomic class of oomycetes contains numerous pathogens of plants and animals but is related to nonpathogenic diatoms and brown algae. Oomycetes have flexible genomes comprising large gene families that play roles in pathogenicity...
- The evolutionary phylogeny of the oomycete "fungi"Gordon W Beakes
School of Biology, Newcastle University, Newcastle upon Tyne, UK
Protoplasma 249:3-19. 2012..The fungal-like oomycetes and hyphochytrids, together with the marine flagellates Pirsonia and Developayella, form part of the clade ..
- Oomycetes and fungi: similar weaponry to attack plantsMaita Latijnhouwers
Laboratory of Phytopathology, Wageningen University, Binnenhaven 5, 6709 PD, Wageningen, Netherlands
Trends Microbiol 11:462-9. 2003Fungi and Oomycetes are the two most important groups of eukaryotic plant pathogens. Fungi form a separate kingdom and are evolutionarily related to animals...
- Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic traffickingYi Ju Lu
Max Planck Institute for Plant Breeding Research, Carl von Linne Weg 10, 50829 Cologne, Germany
Cell Microbiol 14:682-97. 2012Adapted filamentous pathogens such as the oomycetes Hyaloperonospora arabidopsidis (Hpa) and Phytophthora infestans (Pi) project specialized hyphae, the haustoria, inside living host cells for the suppression of host defence and ..
- De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetesMatthew G Links
Agriculture and Agri Food Canada, Saskatoon, SK, S7N 0X2 Canada
BMC Genomics 12:503. 2011..Albugo candida is a biotrophic oomycete that parasitizes various species of Brassicaceae, causing a disease (white blister rust) with remarkable convergence in behaviour to unrelated rusts of basidiomycete fungi...
- Oomycetes, effectors, and all that jazzTolga O Bozkurt
The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom
Curr Opin Plant Biol 15:483-92. 2012Plant pathogenic oomycetes secrete a diverse repertoire of effector proteins that modulate host innate immunity and enable parasitic infection...
- A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organizationMichael F Seidl
Theoretical Biology and Bioinformatics, Department of Biology, Utrecht University, 3584 CH Utrecht, The Netherlands
Plant Physiol 155:628-44. 2011b>Oomycetes comprise a diverse group of organisms that morphologically resemble fungi but belong to the stramenopile lineage within the supergroup of chromalveolates...
- Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfacesSeemay Chou
Department of Cell and Molecular Biology, University of California, Berkeley, CA 94720, USA
Proc Natl Acad Sci U S A 108:13323-8. 2011..These results suggest that ATR1 is a modular repeat protein belonging to an ancient family of oomycete effectors that rapidly evolves to escape host detection and adopt diverse virulence functions...
- Molecular genetics of pathogenic oomycetesSophien Kamoun
Department of Plant Pathology, The Ohio State University, Ohio Agricultural Research and Development Center, Wooster, Ohio 44691, USA
Eukaryot Cell 2:191-9. 2003
- Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathwaysElodie Gaulin
UMR 5546 Centre National de la Recherche Scientifique CNRS, Universite Paul Sabatier Toulouse III, Universite de Toulouse, Pole de Biotechnologie Vegetale, Castanet Tolosan, France
PLoS ONE 3:e1723. 2008..The genus Aphanomyces is phylogenically distinct from well-studied oomycetes such as Phytophthora sp., and contains species pathogenic on plants and aquatic animals...
- Diversity, host, and habitat specificity of oomycete communities in declining reed stands (Phragmites australis) of a large freshwater lakeJan Nechwatal
Universitat Konstanz, Phytopathology, Konstanz, Germany
Mycol Res 112:689-96. 2008We studied the diversity of oomycetes in a declining reed belt (Phragmites australis) of Lake Constance, Germany, using conventional baiting with specific reed and standard oak baits, accompanied by molecular techniques...
- Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thalianaEric Kemen
The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom
PLoS Biol 9:e1001094. 2011..A. laibachii is a member of the Chromalveolata, which incorporates Heterokonts (containing the oomycetes), Apicomplexa (which includes human parasites like Plasmodium falciparum and Toxoplasma gondii), and four other ..
- 454 Genome sequencing of Pseudoperonospora cubensis reveals effector proteins with a QXLR translocation motifMiaoying Tian
Department of Plant Pathology, Michigan State University, East Lansing, MI 48824, USA
Mol Plant Microbe Interact 24:543-53. 2011..cubensis. Furthermore, the massive duplication of PcQNE suggests that they might play pivotal roles in pathogen fitness and pathogenicity...
- Delta-viniferin, a resveratrol dehydrodimer: one of the major stilbenes synthesized by stressed grapevine leavesRoger Pezet
Swiss Federal Agricultural Research Station for Plant Production of Changins RAC Changins, Route de Duillier, CH 1260 Nyon, Switzerland
J Agric Food Chem 51:5488-92. 2003..Its concentration was higher than that of epsilon-viniferin and constitutes one of the most important phytoalexins derived from resveratrol...
- Cell biology of plant-oomycete interactionsAdrienne R Hardham
Plant Cell Biology Group, Research School of Biological Sciences, The Australian National University, Canberra ACT 2601, Australia
Cell Microbiol 9:31-9. 2007..Recent studies have shown that the plant defence response to invading oomycetes is similar to that mounted against fungi, but biochemical differences between oomycete and fungal surface ..
- Host-microbe interactions: shaping the evolution of the plant immune responseStephen T Chisholm
Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, Berkeley, CA 94720, USA
Cell 124:803-14. 2006..In this review, taking an evolutionary perspective, we highlight important discoveries over the last decade about the plant immune response...
- Entry of oomycete and fungal effectors into plant and animal host cellsShiv D Kale
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061 0477, USA
Cell Microbiol 13:1839-48. 2011..Binding of effectors to PI-3-P appears to be mediated by the cell entry motif RXLR in oomycetes, and by diverse RXLR-like variants in fungi...
- Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflowerOsman Radwan
Center for Applied Genetic Technologies, The University of Georgia, 111 Riverbend Road, Athens, GA 30602, USA
Mol Genet Genomics 280:111-25. 2008..Sunflower nucleotide and amino acid sequences have been deposited in DDBJ/EMBL/GenBank under accession numbers EF 560168-EF 559378 and ABQ 58077-ABQ 57529...
- Interspecific hybridization in plant-associated fungi and oomycetes: a reviewC L Schardl
Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 0091, USA
Mol Ecol 12:2861-73. 2003Fungi (kingdom Mycota) and oomycetes (kingdom Stramenopila, phylum Oomycota) are crucially important in the nutrient cycles of the world. Their interactions with plants sometimes benefit and sometimes act to the detriment of humans...
- Thiamine induced resistance to Plasmopara viticola in grapevine and elicited host-defense responses, including HR like-cell deathHatem Boubakri
Laboratoire de Physiologie Moléculaire des Plantes, Centre de Biotechnologie de Borj Cedria, 2050 Hammam Lif, Tunisia
Plant Physiol Biochem 57:120-33. 2012....
- Resistance to Plasmopara viticola in grapevine 'Bianca' is controlled by a major dominant gene causing localised necrosis at the infection siteDiana Bellin
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100, Udine, Italy
Theor Appl Genet 120:163-76. 2009....
- Cultivar-specific kinetics of gene induction during downy mildew early infection in grapevineAndreia Figueiredo
Plant Systems Biology Lab, Center of Biodiversity, Functional and Integrative Genomics, Science Faculty of Lisbon University, 1749 016 Lisbon, Portugal
Funct Integr Genomics 12:379-86. 2012..This study is the first to directly compare resistant and susceptible cultivars responses as early as 6 hpi with P. viticola, providing several candidate genes potentially related to the expression of resistance traits...
- Changes in carbohydrate metabolism in Plasmopara viticola-infected grapevine leavesMagdalena Gamm
Université de Bourgogne Plante Microbe Environnement, Dijon Cedex, France
Mol Plant Microbe Interact 24:1061-73. 2011..Altogether, these results highlight a dramatic alteration of carbohydrate metabolism correlated with later stages of P. viticola development in leaves...
- Identification of Hyaloperonospora arabidopsidis transcript sequences expressed during infection reveals isolate-specific effectorsAdriana Cabral
Department of Plant Microbe Interactions, Department of Biology, Utrecht University, Utrecht, The Netherlands
PLoS ONE 6:e19328. 2011..We propose that differences in host colonization can be conditioned by isolate-specific effectors...
- Multiple horizontal gene transfer events and domain fusions have created novel regulatory and metabolic networks in the oomycete genomePaul Francis Morris
Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, USA
PLoS ONE 4:e6133. 2009..in the two diatom genomes, but the majority of these proteins have formed after the split between diatoms and oomycetes. Documentation of multiple cases of domain fusions that are common to both oomycetes and diatom genomes lends ..
- Are grapevine stomata involved in the elicitor-induced protection against downy mildew?Mathilde Allegre
Unité Mixte de Recherche INRA 1088 CNRS 5184 Université de Bourgogne Plante Microbe Environnement, 17 rue Sully, BP 86510, 21065 Dijon Cedex, France
Mol Plant Microbe Interact 22:977-86. 2009..In plants, we observed that the protection against downy mildew induced by some elicitors is probably not due only to effects on stomatal movements or to a guard-cell-specific activation of ROS production...
- New role for Cdc14 phosphatase: localization to basal bodies in the oomycete phytophthora and its evolutionary coinheritance with eukaryotic flagellaAudrey M V Ah-Fong
Department of Plant Pathology and Microbiology and Center for Plant Cell Biology, University of California Riverside, Riverside, California, United States of America
PLoS ONE 6:e16725. 2011..An ancestral role of Cdc14 in the flagellar stage of eukaryotes is thereby proposed...
- Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responsesGiulia Malacarne
Fondazione Edmund Mach, Research and Innovation Center, Via E, Mach 1, 38010 San Michele all Adige, Italy
BMC Plant Biol 11:114. 2011..viticola of the Merzling × Teroldego cross by profiling the stilbenoid content of the leaves of an entire population and the transcriptome of resistant and susceptible individuals following infection...
- Abnormal callose response phenotype and hypersusceptibility to Peronospoara parasitica in defence-compromised arabidopsis nim1-1 and salicylate hydroxylase-expressing plantsN M Donofrio
Cornell University, Department of Plant Pathology, Ithaca, NY 14853, USA
Mol Plant Microbe Interact 14:439-50. 2001..Additionally, the enhanced susceptibility displayed by nim1-1 and NahG plants shows that even wild-type susceptible hosts exert defense functions that reduce disease severity and pathogen fitness...
- Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mappingAdnane Nemri
Sainsbury Laboratory, Norwich NR4 7UH, United Kingdom
Proc Natl Acad Sci U S A 107:10302-7. 2010..Our results suggest that combining association and linkage mapping could accelerate resistance gene discovery in plants...
- How do obligate parasites evolve? A multi-gene phylogenetic analysis of downy mildewsMarkus Göker
Lehrstuhl für Spezielle Botanik und Mykologie, Botanisches Institut, Universitat Tubingen, Auf der Morgenstelle 1, D 72076 Tubingen, Germany
Fungal Genet Biol 44:105-22. 2007Plant parasitism has independently evolved as a nutrition strategy in both true fungi and Oomycetes (stramenopiles)...
- Detection of differential host susceptibility to the marine oomycete pathogen Eurychasma dicksonii by real-time PCR: not all algae are equalClaire M M Gachon
Culture Collection of Algae and Protozoa, Scottish Association for Marine Science, Dunstaffnage Marine Laboratory, Oban, Argyll PA37 1QA, Scotland, United Kingdom
Appl Environ Microbiol 75:322-8. 2009....
- The development, ultrastructural cytology, and molecular phylogeny of the basal oomycete Eurychasma dicksonii, infecting the filamentous phaeophyte algae Ectocarpus siliculosus and Pylaiella littoralisSatoshi Sekimoto
Graduate School of Natural Science, Konan University, Okamoto, Higashinada, Kobe, Hyogo 658 8501, Japan
Protist 159:299-318. 2008..of peripheral vesicles, most likely homologous to the dorsal encystment vesicles and K-bodies observed in other oomycetes. Following zoospore liberation the walls of the empty cyst were left behind, forming the so-called net ..
- Hormone (dis)harmony moulds plant health and diseaseMurray R Grant
School of Biosciences, University of Exeter, Exeter EX4 4QD, UK
Science 324:750-2. 2009..A better understanding of cross-talk between hormonal and defense signaling pathways should reveal new potential targets for microbial effectors that attenuate host resistance mechanisms...
- Genomics of biotrophy in fungi and oomycetes--emerging patternsPietro Spanu
Department of Life Sciences, Imperial College of Science, Technology and Medicine, Imperial College Road, London SW7 2AZ, United Kingdom
Curr Opin Plant Biol 13:409-14. 2010....
- The zig-zag-zig in oomycete-plant interactionsIngo Hein
Scottish Crop Research Institute, Invergowrie, Dundee, UK
Mol Plant Pathol 10:547-62. 2009..In this article, we consider the complex molecular interplay between plants and plant pathogenic oomycetes, drawing on recent literature to illustrate what is known about oomycete PAMPs and elicitors of defence ..
- A catalogue of the effector secretome of plant pathogenic oomycetesSophien Kamoun
Department of Plant Pathology, Ohio State University, Ohio Agricultural Research and Development Center, Wooster, Ohio 44691, USA
Annu Rev Phytopathol 44:41-60. 2006The oomycetes form a phylogenetically distinct group of eukaryotic microorganisms that includes some of the most notorious pathogens of plants...
- Tête à tête inside a plant cell: establishing compatibility between plants and biotrophic fungi and oomycetesRichard J O'Connell
Max Planck Institute for Plant Breeding Research, Department of Plant Microbe Interactions, Carl von Linne Weg 10, D 50829 Köln, Germany
New Phytol 171:699-718. 2006....
- Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestansSeverine Grouffaud
Plant Pathology Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK
Microbiology 154:3743-51. 2008..These results suggest common mechanisms for protein translocation in both malaria and oomycete pathosystems...
- Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistancePaul R J Birch
Division of Plant Science, College of Life Sciences, University of Dundee at SCRI, Errol Road, Invergowrie, Dundee DD2 5DA, UK
Curr Opin Plant Biol 11:373-9. 2008To manipulate host defences, plant pathogenic oomycetes secrete and translocate RXLR effectors into plant cells...
- The effectiveness of stilbenes in resistant Vitaceae: ultrastructural and biochemical events during Plasmopara viticola infection processVirginia Alonso-Villaverde
Mision Biologica de Galicia, Consejo Superior de Investigaciones Cientificas, Pontevedra, Spain
Plant Physiol Biochem 49:265-74. 2011..viticola penetration. In this cultivar, the concentration of all identified stilbenes exceeds 1×10³ μmol mg(-1) FW. The critical role of stilbenes in the resistance of Vitis spp. is discussed...
- Entering and breaking: virulence effector proteins of oomycete plant pathogensBrett M Tyler
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, One Washington Street, Blacksburg, VA 24061 0477, USA
Cell Microbiol 11:13-20. 2009..The mechanisms by which the effector enter host cells, and by which they suppress host defences, remain to be elucidated...
- From elicitins to lipid-transfer proteins: a new insight in cell signalling involved in plant defence mechanismsJean Pierre Blein
UMR 692 INRA Université de Bourgogne, Laboratoire de Phytopharmacie et de Biochimie des Interactions Cellulaires, INRA, BP 86510, 21065 Dijon Cedex, France
Trends Plant Sci 7:293-6. 2002Elicitins and lipid-transfer proteins are small cysteine-rich lipid-binding proteins secreted by oomycetes and plant cells, respectively, that share some structural and functional properties...
- Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogensJeffrey G Ellis
CSIRO Division of Plant Industry, Canberra, ACT 2601, Australia
Curr Opin Plant Biol 12:399-405. 2009..Advances are being made in the identification and in understanding the evolution of effectors and of host uptake signals used by eukaryotic effectors to enter host cells...
- Effectors of biotrophic fungi and oomycetes: pathogenicity factors and triggers of host resistancePeter N Dodds
Commonwealth Scientific and Industrial Research Organisation, Division of Plant Industry, Canberra ACT 2601, Australia
New Phytol 183:993-1000. 2009..Genome sequence information indicates that oomycetes may express several hundred such host-translocated effectors...
- WRR4 encodes a TIR-NB-LRR protein that confers broad-spectrum white rust resistance in Arabidopsis thaliana to four physiological races of Albugo candidaM Hossein Borhan
Agriculture and Agri Food Canada, Saskatoon Research Centre, Saskatoon, SK, S7N 0X2, Canada
Mol Plant Microbe Interact 21:757-68. 2008..candida race 4. This residual incompatibility is independent of functional EDS1...
- New insights into animal pathogenic oomycetesAndrew J Phillips
School of Medical Sciences, University of Aberdeen, Aberdeen AB25 2ZD, UK
Trends Microbiol 16:13-9. 2008Many species of oomycetes cause economic and environmental damage owing to their ability to infect a range of plants and animals...
- Basic compatibility of Albugo candida in Arabidopsis thaliana and Brassica juncea causes broad-spectrum suppression of innate immunityA J Cooper
Warwick HRI, University of Warwick, Wellesbourne, Warwickshire, CV35 9EF, U K
Mol Plant Microbe Interact 21:745-56. 2008..juncea to H. arabidopsis. Broad-spectrum powdery mildew resistance conferred by RPW8 also was suppressed in Arabidopsis thaliana to two morphotypes of Erysiphe spp. following pre-infection with A. candida subsp. arabidopsis...
- Hassiella monospora gen. et sp. nov., a microfungus from the 400 million year old Rhynie chertThomas N Taylor
Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045 7534, USA
Mycol Res 110:628-32. 2006..When combined, these features are suggestive of the oogonia/oosporangia in certain extant members of the Peronosporomycetes (Oomycota)...
- Combresomyces cornifer gen. sp. nov., an endophytic peronosporomycete in Lepidodendron from the Carboniferous of central FranceNora Dotzler
Bayerische Staatssammlung für Paläontologie und Geologie und GeoBio Center LMU, Richard Wagner Strasse 10, 80333 Munich, Germany
Mycol Res 112:1107-14. 2008..Although the organism occurs exclusively in the periderm of L. rhodumnense, it is not known whether it represents a symptomless endophyte, pathogen, or saprotroph...
- Oomycete and fungal effector entry, a microbial Trojan horseShiv D Kale
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061, USA
New Phytol 193:874-81. 2012..These findings suggest that effector blocking technologies could be developed and utilized in a variety of important crop species against a broad spectrum of plant pathogens...
- A fossil peronosporomycete oogonium with an unusual surface ornament from the Carboniferous of FranceMichael Krings
Department für Geo und Umweltwissenschaften, Paläontologie und Geobiologie, Ludwig Maximilians Universitat, and Bayerische Staatssammlung für Paläontologie und Geologie, Richard Wagner Straße 10, 80333 Munich, Germany
Fungal Biol 114:446-50. 2010..This fossil represents only the third record of an unequivocal peronosporomycete from the Carboniferous, and thus provides important details about the evolutionary history of this group of organisms...
- The unique architecture and function of cellulose-interacting proteins in oomycetes revealed by genomic and structural analysesMathieu Larroque
Universite de Toulouse, UPS, Laboratoire de Recherche en Sciences Végétales, Auzeville, Castanet Tolosan, France
BMC Genomics 13:605. 2012b>Oomycetes are fungal-like microorganisms evolutionary distinct from true fungi, belonging to the Stramenopile lineage and comprising major plant pathogens...
- A mutation within the leucine-rich repeat domain of the Arabidopsis disease resistance gene RPS5 partially suppresses multiple bacterial and downy mildew resistance genesR F Warren
Department of Biology, Indiana University, Bloomington, Indiana 47405, USA
Plant Cell 10:1439-52. 1998..The third LRR is relatively well conserved, and we speculate that it may interact with a signal transduction component shared by multiple R gene pathways...
- Groovy times: filamentous pathogen effectors revealedSophien Kamoun
Department of Plant Pathology, Ohio State University, Ohio Agricultural Research and Development Center, Wooster, OH 44691, USA
Curr Opin Plant Biol 10:358-65. 2007Filamentous microorganisms, such as fungi and oomycetes, secrete an arsenal of effector proteins that modulate plant innate immunity and enable parasitic infection...
- Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistanceGabriele Di Gaspero
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100, Udine, Italy
Theor Appl Genet 124:277-86. 2012..The coexistence of multiple resistance alleles or paralogues in the same chromosomal region but in different haplotypes counteracts efforts to pyramidise them in a diploid individual via conventional breeding...
- Evolution of diversity in Albugo is driven by high host specificity and multiple speciation events on closely related BrassicaceaeSebastian Ploch
Biodiversity and Climate Research Centre BiK F Georg Voigt Str 14 16, D 60325 Frankfurt, Germany
Mol Phylogenet Evol 57:812-20. 2010The Albuginaceae, responsible for white blister rust disease on various angiosperms, are obligate biotrophic oomycetes that are only distantly related to downy mildews (Peronosporaceae)...
- Characterization of a Plasmopara species on Ambrosia artemisiifolia, and notes on P. halstedii, based on morphology and multiple gene phylogeniesYoung Joon Choi
Division of Environmental Science and Ecological Engineering, College of Life Sciences and Biotechnology, Korea University, Seoul 136 701, Republic of Korea
Mycol Res 113:1127-36. 2009..These findings might serve as a basis for a taxonomical reassessment of the P. halstedii complex and also for the delimitation of several well-defined species within this complex...
- cDNA-AFLP analysis of plant and pathogen genes expressed in grapevine infected with Plasmopara viticolaMarianna Polesani
Department for Sciences, Technologies e Markets of Grapevine and Wine, 37029 San Floriano di Valpolicella VR, Italy
BMC Genomics 9:142. 2008..The molecular basis of compatibility and disease development in this system is poorly understood. We have carried out a large-scale cDNA-AFLP analysis to identify grapevine and P. viticola genes associated with the infection process...
- Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genomeLaura Baxter
School of Life Sciences, Warwick University, Wellesbourne, CV35 9EF, UK
Science 330:1549-51. 2010..These attributes comprise a genomic signature of evolution toward obligate biotrophy...
- Host range and specificity of an Argentinean isolate of the aquatic fungus Leptolegnia chapmanii (Oomycetes: Saprolegniales), a pathogen of mosquito larvae (Diptera: Culicidae)C C Lopez Lastra
CEPAVE Centro de Estudios Parasitológicos y de Vectores CONICET UNLP, La Plata, Argentina
Mycopathologia 158:311-5. 2004..renatoi and I. paranensis were not infected by Leptolegnia. None of the non-target fauna treated was infected by L. chapmanii with exception of members of the Family Chironomidae which were susceptible at low infection rates...
- Rpv10: a new locus from the Asian Vitis gene pool for pyramiding downy mildew resistance loci in grapevineFlorian Schwander
JKI Institute for Grapevine Breeding Geilweilerhof, 76833, Siebeldingen, Germany
Theor Appl Genet 124:163-76. 2012..Possibilities for using the resistance locus Rpv10 in a grapevine breeding programme are discussed. Furthermore, the marker data revealed 'Severnyi' × 'Muscat Ottonel' as the true parentage for the male parent of 'Solaris'...
- Evidence for high degrees of specialisation, evolutionary diversity, and morphological distinctiveness in the genus BremiaYoung Joon Choi
Korea University, Division of Environmental Science and Ecological Engineering, Seoul, Republic of Korea
Fungal Biol 115:102-11. 2011..This finding might stimulate the search for durable resistance genes in genera closely related to the genus Lactuca and in divergent species of the genus itself...
- DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacerGregg P Robideau
Biology Department, Carleton University, 1125 Colonel By Dr, Ottawa, Ontario, Canada
Mol Ecol Resour 11:1002-11. 2011..Proper identification to the species level is a critical first step in any investigation of oomycetes, whether it is research driven or compelled by the need for rapid and accurate diagnostics during a pathogen ..
- Evidence of parasitic Oomycetes (Peronosporomycetes) infecting the stem cortex of the Carboniferous seed fern Lyginopteris oldhamiaC Strullu-Derrien
Laboratoire Mycorhizes, Faculte des Sciences, Universite d Angers, Angers, France
Proc Biol Sci 278:675-80. 2011..structure of the oogonia and antheridia and features observed within the hyphae demonstrate a relationship with Oomycetes (Peronosporomycetes)...
- A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequencesJaime E Blair
Department of Plant Pathology, The Pennsylvania State University, University Park, PA 16802, USA
Fungal Genet Biol 45:266-77. 2008..A more resolved phylogeny of Phytophthora species will allow for better interpretations of the overall evolutionary history of the genus...
- Genomics of phytopathogenic fungi and the development of bioinformatic resourcesDarren M Soanes
School of Biological Sciences, University of Exeter, Washington Singer Laboratories, UK
Mol Plant Microbe Interact 15:421-7. 2002..New querying functions and large sequence sets from a variety of phytopathogenic species will be incorporated in due course...
- Taxonomy, molecular phylogeny, and ultrastructural morphology of Olpidiopsis porphyrae sp. nov. (Oomycetes, straminipiles), a unicellular obligate endoparasite of Bangia and Porphyra spp. (Bangiales, Rhodophyta)Satoshi Sekimoto
Graduate School of Natural Science, Konan University, Okamoto, Higashinada, Kobe, Hyogo 658 8501, Japan
Mycol Res 112:361-74. 2008..porphyrae with zoospore initials containing K-bodies and tubular mitochondrial cristae is characteristic of oomycetes. Group I intron-like multiple insertions were found in the SSU rRNA gene of O. porphyrae...
- Sodium, potassium-atpases in algae and oomycetesJavier Barrero-Gil
Departamento de Biotecnologia, Escuela Tecnica Superior de Ingenieros Agronomos, Universidad Politecnica de Madrid, Madrid, Spain
J Bioenerg Biomembr 37:269-78. 2005....
- Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetesJoe Win
Department of Plant Pathology, Ohio State University Ohio Agricultural Research and Development Center, Wooster, Ohio 44691, USA
Plant Cell 19:2349-69. 2007..The three examined plant pathogenic oomycetes carry complex and diverse sets of RXLR effector genes that have undergone relatively rapid birth and death ..
- Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene OntologyTrudy Torto-Alalibo
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
BMC Microbiol 9:S3. 2009..secretion (in bacteria), physical injection (nematodes and insects) and protein translocation signal sequences (oomycetes and fungi)...
- Robust detection and identification of multiple oomycetes and fungi in environmental samples by using a novel cleavable padlock probe-based ligation detection assayR Van Doorn
Plant Research International B V, Wageningen, The Netherlands
Appl Environ Microbiol 75:4185-93. 2009..We designed and tested nine PLPs targeting several oomycetes and fungi...
- Linkage mapping of genes controlling resistance to white rust (Albugo candida) in Brassica rapa (syn. campestris) and comparative mapping to Brassica napus and Arabidopsis thalianaC Kole
Department of Agronomy, University of Wisconsin, Madison 53706, USA
Genome 45:22-7. 2002..Alignment of these maps to the physical map of the Arabidopsis genome identified regions to target for comparative fine mapping using this model organism...
- Phylogenetic relationships of Albugo species (white blister rusts) based on LSU rDNA sequence and oospore dataHermann Voglmayr
Department of Systematic and Evolutionary Botany, University of Vienna, Rennweg 14, A 1030 Wien, Austria
Mycol Res 110:75-85. 2006..The DNA sequence data further indicate that Albugo candida and Albugo tragopogonis each may consist of several distinct lineages, but additional data need to be collected before further taxonomic conclusions can be made...
- Genome size determination in peronosporales (Oomycota) by Feulgen image analysisH Voglmayr
Institute of Botany and Botanical Garden, University of Vienna, Rennweg 14, Vienna, A 1030, Austria
Fungal Genet Biol 25:181-95. 1998....
- Evidence for the importance of enzymatic digestion of epidermal walls during subepidermal sporulation and pustule opening in white blister rusts (Albuginaceae)Annerose Heller
Institute of Botany 210, University of Hohenheim, Garbenstrasse 30, D 70599 Stuttgart, Germany
Mycol Res 113:657-67. 2009..Their subepidermal mode of sporulation is unique amongst Oomycetes and leads to blister-like structures on their hosts similar to those produced by true rusts (Uredinales)...
- Development of a polymerase chain reaction diagnostic test for the detection of the biotrophic pathogen Plasmopara halstedii in sunflowerP Roeckel-Drevet
Université Blaise Pascal INRA, Organisation et variabilité des génomes végétaux, Aubiere, France
Can J Microbiol 45:797-803. 1999..The sensitivity of the technique was evaluated. The assay successfully reveals the presence of Plasmopara halstedii in infected sunflower plants prior to sporulation...
- WRR4, a broad-spectrum TIR-NB-LRR gene from Arabidopsis thaliana that confers white rust resistance in transgenic oilseed Brassica cropsMohammad Hossein Borhan
Agriculture and Agri Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada, S7N 0X2
Mol Plant Pathol 11:283-91. 2010..candida race for each host species. The combined data indicate that WRR4 could potentially provide a novel source of white rust resistance in oilseed and vegetable brassica crops...
- Molecular mapping reveals two independent loci conferring resistance to Albugo candida in the east European germplasm of oilseed mustard Brassica junceaPriya Panjabi-Massand
Centre for Genetic Manipulation of Crop Plants, University of Delhi South Campus, Benito Juarez Road, New Delhi, 110021, India
Theor Appl Genet 121:137-45. 2010..In both the cases, closely linked flanking markers were developed based on synteny between Arabidopsis and B. juncea. These flanking markers will assist introgression of resistance-conferring loci in the susceptible varieties...
- Different pathotypes of the sunflower downy mildew pathogen Plasmopara halstedii all contain isometric virionsdaggerMarion Heller-Dohmen
Institute for Botany, University of Hohenheim, 70593 Stuttgart, Germany
Mol Plant Pathol 9:777-86. 2008..By contrast, there were no ultrastructural indications of virus-like particles in eight other related Oomycetes. The virions of representative P...
- Profiling of resveratrol oligomers, important stress metabolites, accumulating in the leaves of hybrid Vitis vinifera (Merzling × Teroldego) genotypes infected with Plasmopara viticolaFulvio Mattivi
Fondazione Edmund Mach, IASMA Research and Innovation Centre, San Michele all Adige, Italy
J Agric Food Chem 59:5364-75. 2011..The isolation of a dimer deriving from the condensation of (+)-catechin with trans-caffeic acid also indicated that other preformed phenolics are structurally modified in tissues infected with P. viticola...
- Studies on physiology, zoospore morphology and entomopathogenic potential of the aquatic oomycete: Lagenidium giganteumBanani Sur
Fermentation Technology Division, Central Drug Research Institute, Lucknow, India
Mycopathologia 154:51-4. 2002..giganteum failed to grow at 37 degrees C limiting its effectiveness in warmer climates. Introduction of this organism to variety of habitats with various mosquito species will demonstrate the efficacy of the organism as a bioinsecticide...
- Ultrastructural characterisation of the host-pathogen interface in white blister-infected Arabidopsis leavesSoner Soylu
Department of Plant Protection, University of Mustafa Kemal, Faculty of Agriculture, 31034, Antakya, Hatay, Turkey
Mycopathologia 158:457-64. 2004..By contrast, the extrahaustorial membrane, where the host PM surrounded the haustorium, was consistently very lightly stained...
- The nucleotide sequence and genome organization of Sclerophthora macrospora virus BT Yokoi
Department of Agricultural Biology, The University of Tokyo, Yayoi 1 1 1, Bunkyo ku, Tokyo, 113 8657, Japan
Virology 264:344-9. 1999..These results suggest that SmV B should be classified into a new group of mycoviruses...
- The Arabidopsis downy mildew resistance gene, RPP13-Nd, functions independently of NDR1 and EDS1 and does not require the accumulation of salicylic acidP D Bittner-Eddy
Horticulture Research International, Wellesbourne, Warwick, UK
Mol Plant Microbe Interact 14:416-21. 2001..We conclude that RPP13-Nd is the first Arabidopsis R gene product reported to act via a novel signaling pathway that is independent of salicylic acid-mediated responses and is completely independent of NDR1 and EDS1...
- Recognition of the Hyaloperonospora parasitica effector ATR13 triggers resistance against oomycete, bacterial, and viral pathogensMaike C Rentel
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720 3120, USA
Proc Natl Acad Sci U S A 105:1091-6. 2008Phytopathogenic oomycetes cause some of the most devastating diseases affecting agricultural crops...
- Ten things to know about oomycete effectorsSebastian Schornack
The Sainsbury Laboratory, Norwich, NR4 7UH, UK
Mol Plant Pathol 10:795-803. 2009Long considered intractable organisms by fungal genetic research standards, the oomycetes have recently moved to the centre stage of research on plant-microbe interactions...
- WETLAND URBANIZATION GRADIENTS AND VECTOR BORNE DISEASESJOSEPH KIESECKER; Fiscal Year: 2002..Development of mathematical models for these trematode systems will provide a template for studies of other snail borne diseases with similar community modules, for example, schistosomiasis. ..
- Molecular Evolution of Eukaryotes: a protistan emphasisMitchell Sogin; Fiscal Year: 2008..unreadable] [unreadable]..
- Rhabdovirus phosphoproteins: RNA silencing and complex formationMichael Goodin; Fiscal Year: 2008..unreadable] [unreadable] [unreadable]..
- Spore Dispersal and Germination in StachybotrysNICHOLAS MONEY; Fiscal Year: 2007..Students involved in this work will benefit by gaining extremely valuable laboratory experience, and by making important contributions to our understanding of the biology of Stachybotrys. ..