databases

Summary

Summary: Organized collections of computer records, standardized in format and content, that are stored in any of a variety of computer-readable modes. They are the basic sets of data from which computer-readable files are created. (from ALA Glossary of Library and Information Science, 1983)

Top Publications

  1. pmc Measuring disease prevalence: a comparison of musculoskeletal disease using four general practice consultation databases
    Kelvin Jordan
    Primary Care Musculoskeletal Research Centre, Keele University, Keele
    Br J Gen Pract 57:7-14. 2007
  2. pmc Establishment of a universal size standard strain for use with the PulseNet standardized pulsed-field gel electrophoresis protocols: converting the national databases to the new size standard
    Susan B Hunter
    Centers for Disease Control and Prevention, 1600 Clifton Rd, Mail Stop C03, Atlanta, GA 30333, USA
    J Clin Microbiol 43:1045-50. 2005
  3. pmc Use of administrative data or clinical databases as predictors of risk of death in hospital: comparison of models
    Paul Aylin
    Dr Foster Unit, Imperial College London, London EC1A 9LA
    BMJ 334:1044. 2007
  4. ncbi Beyond emotion archetypes: databases for emotion modelling using neural networks
    Roddy Cowie
    School of Psychology, Queen s University Belfast
    Neural Netw 18:371-88. 2005
  5. pmc Finding fusion genes resulting from chromosome rearrangement by analyzing the expressed sequence databases
    Yoonsoo Hahn
    Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 4264, USA
    Proc Natl Acad Sci U S A 101:13257-61. 2004
  6. pmc Did intense adverse media publicity impact on prescribing of paroxetine and the notification of suspected adverse drug reactions? Analysis of routine databases, 2001-2004
    Richard M Martin
    Department of Social Medicine, University of Bristol, Bristol, UK
    Br J Clin Pharmacol 61:224-8. 2006
  7. pmc Towards using administrative databases to measure population-based indicators of quality of end-of-life care: testing the methodology
    Eva Grunfeld
    Cancer Outcomes Research Program, Cancer Care Nova Scotia, Dalhousie University, Halifax, Canada
    Palliat Med 20:769-77. 2006
  8. ncbi Data mining for signals in spontaneous reporting databases: proceed with caution
    Wendy P Stephenson
    Wendy Stephenson and Associates LLC, Maple Glen, PA 19002, USA
    Pharmacoepidemiol Drug Saf 16:359-65. 2007
  9. ncbi Cancer patient flows discovery in DRG databases
    Nicolas Jay
    Laboratoire SPI EAO, Faculty of Medecine, Nancy, France
    Stud Health Technol Inform 124:725-30. 2006
  10. ncbi Intelligent databases assist transparent and sound economic valuation of ecosystem services
    Ferdinando Villa
    Ecoinformatics Collaboratory, Gund Institute for Ecological Economics, University of Vermont, Burlington, VT 05401, USA
    Environ Manage 39:887-99. 2007

Detail Information

Publications215 found, 100 shown here

  1. pmc Measuring disease prevalence: a comparison of musculoskeletal disease using four general practice consultation databases
    Kelvin Jordan
    Primary Care Musculoskeletal Research Centre, Keele University, Keele
    Br J Gen Pract 57:7-14. 2007
    ..Primary care consultation data are an important source of information on morbidity prevalence. It is not known how reliable such figures are...
  2. pmc Establishment of a universal size standard strain for use with the PulseNet standardized pulsed-field gel electrophoresis protocols: converting the national databases to the new size standard
    Susan B Hunter
    Centers for Disease Control and Prevention, 1600 Clifton Rd, Mail Stop C03, Atlanta, GA 30333, USA
    J Clin Microbiol 43:1045-50. 2005
    ..The increasing number of databases, difficulty in identifying an organism-specific standard for each database, the increased range of band sizes ..
  3. pmc Use of administrative data or clinical databases as predictors of risk of death in hospital: comparison of models
    Paul Aylin
    Dr Foster Unit, Imperial College London, London EC1A 9LA
    BMJ 334:1044. 2007
    ..in hospital based on an administrative database with published results based on data derived from three national clinical databases: the national cardiac surgical database, the national vascular database and the colorectal cancer study.
  4. ncbi Beyond emotion archetypes: databases for emotion modelling using neural networks
    Roddy Cowie
    School of Psychology, Queen s University Belfast
    Neural Netw 18:371-88. 2005
    ..Several schemes are emerging as candidates for describing pervasive emotion. The major contemporary databases are listed, emphasising those which are naturalistic or induced, multimodal, and influential.
  5. pmc Finding fusion genes resulting from chromosome rearrangement by analyzing the expressed sequence databases
    Yoonsoo Hahn
    Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 4264, USA
    Proc Natl Acad Sci U S A 101:13257-61. 2004
    ..a semiautomatic procedure for identifying fusion gene transcripts by using publicly available mRNA and EST databases. With this procedure, we have identified 96 transcript sequences that are derived from 60 known fusion genes...
  6. pmc Did intense adverse media publicity impact on prescribing of paroxetine and the notification of suspected adverse drug reactions? Analysis of routine databases, 2001-2004
    Richard M Martin
    Department of Social Medicine, University of Bristol, Bristol, UK
    Br J Clin Pharmacol 61:224-8. 2006
    ..To document the impact on clinical practice in England of media attention around possible adverse effects of paroxetine...
  7. pmc Towards using administrative databases to measure population-based indicators of quality of end-of-life care: testing the methodology
    Eva Grunfeld
    Cancer Outcomes Research Program, Cancer Care Nova Scotia, Dalhousie University, Halifax, Canada
    Palliat Med 20:769-77. 2006
    ..a retrospective cohort approach, we assessed the feasibility, validity and reliability of using administrative databases to measure quality indicators of end-of-life care in two Canadian provinces...
  8. ncbi Data mining for signals in spontaneous reporting databases: proceed with caution
    Wendy P Stephenson
    Wendy Stephenson and Associates LLC, Maple Glen, PA 19002, USA
    Pharmacoepidemiol Drug Saf 16:359-65. 2007
    ....
  9. ncbi Cancer patient flows discovery in DRG databases
    Nicolas Jay
    Laboratoire SPI EAO, Faculty of Medecine, Nancy, France
    Stud Health Technol Inform 124:725-30. 2006
    ..This unsupervised conceptual clustering method allowed us to describe patients flows with an easily understandable visual representation...
  10. ncbi Intelligent databases assist transparent and sound economic valuation of ecosystem services
    Ferdinando Villa
    Ecoinformatics Collaboratory, Gund Institute for Ecological Economics, University of Vermont, Burlington, VT 05401, USA
    Environ Manage 39:887-99. 2007
    ..This has brought to light the importance of environmental valuation databases, which provide reliable valuation data to inform secondary valuation with enough detail to enable the transfer ..
  11. ncbi Laparoscopic vs open colectomy: outcomes comparison based on large nationwide databases
    Ulrich Guller
    Department of Surgery, Duke University Medical Center, Durham, NC, USA
    Arch Surg 138:1179-86. 2003
    ..Laparoscopic colectomy has significant advantages over open colectomy in the treatment of diverticular disease with respect to the length of hospital stay, routine hospital discharge, and postoperative morbidity and mortality...
  12. ncbi Nursing sensitive databases: their existence, challenges, and importance
    G Rumay Alexander
    University of North Carolina at Chapel Hill School of Nursing, Chapel Hill, North Carolina, USA
    Med Care Res Rev 64:44S-63S. 2007
    ..This article summarizes existing data sources and recommendations for improving measures, data collection, and research on nurse-sensitive care...
  13. ncbi The evolution of DNA databases--recommendations for new European STR loci
    Peter Gill
    Forensic Science Service, Birmingham, UK
    Forensic Sci Int 156:242-4. 2006
    ..This will increase the number of European standard Interpol loci from 7 to 10...
  14. pmc Searching biomedical databases on complementary medicine: the use of controlled vocabulary among authors, indexers and investigators
    Linda S Murphy
    Science Library Reference Department, University of California, Irvine 926233 9557, USA
    BMC Complement Altern Med 3:3. 2003
    ..We hypothesized that authors, investigators and indexers in four biomedical databases are not consistent in their use of terminology in Complementary and Alternative Medicine (CAM).
  15. ncbi Ultrafast shape recognition to search compound databases for similar molecular shapes
    Pedro J Ballester
    Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, OX1 3QZ, United Kingdom
    J Comput Chem 28:1711-23. 2007
    ..Despite its extremely fast comparison rate, USR will be shown to be highly accurate at describing, and hence comparing, molecular shapes...
  16. ncbi Lack of findings for the association between obesity risk and usual sugar-sweetened beverage consumption in adults--a primary analysis of databases of CSFII-1989-1991, CSFII-1994-1998, NHANES III, and combined NHANES 1999-2002
    Sam Z Sun
    Regulatory, Nutritional and Scientific Affairs Group, James R Randall Research Center, Archer Daniels Midland Company, 1001 Brush College Road, Decatur, IL 62521, USA
    Food Chem Toxicol 45:1523-36. 2007
    ..Statistical analysis was performed using population dietary survey databases of USDA CSFII 1989-1991, CSFII 1994-1996, CDC NHANES III, and combined NHANES 1999-2002...
  17. ncbi Comparing measures of injury severity for use with large databases
    Shaun C R Stephenson
    Injury Prevention Research Unit, Department of Preventive and Social Medicine, Dunedin School of Medicine, University of Otago, New Zealand
    J Trauma 53:326-32. 2002
    ....
  18. ncbi Pathology data integration with eXtensible Markup Language
    Jules J Berman
    Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA
    Hum Pathol 36:139-45. 2005
    ..This manuscript gives pathologists a glimpse into how XML allows pathology data to be linked to other types of biomedical data and reduces our dependence on centralized proprietary databases.
  19. ncbi National databases and rheumatology research I: longitudinal databases in Scandinavia
    Tuulikki Sokka
    Division of Rheumatology and Immunology, Department of Medicine, Vanderbilt University, 203 Oxford House, Nashville, TN 37232 4500, USA
    Rheum Dis Clin North Am 30:851-67, viii. 2004
    Nationwide population-based longitudinal databases provide excellent resources for medical research in Scandinavia...
  20. ncbi Diagnosing asthma: the fit between survey and administrative database
    Lisa Huzel
    Department of Internal Medicine, University of Manitoba, Winnipeg, Manitoba, Canada
    Can Respir J 9:407-12. 2002
    ..These procedures are extremely expensive. It would be helpful if, at least for some purposes, they could be replaced by cheaper techniques with adequate validity...
  21. ncbi Development of a food frequency questionnaire module and databases for compounds in cooked and processed meats
    Rashmi Sinha
    Nutrition Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892 7273, USA
    Mol Nutr Food Res 49:648-55. 2005
    ..cooked meat module within a food frequency questionnaire (FFQ) in the United States of America and created databases to be used in conjunction with this FFQ to estimate intake of HCAs and benzo[a]pyrene, a marker of PAHs...
  22. ncbi Searching literature databases for health care economic evaluations: how systematic can we afford to be?
    Franco Sassi
    Department of Social Policy and Administration LSE Health and Social Care, London, United Kingdom
    Med Care 40:387-94. 2002
    ..So far, reviews of economic evaluations have relied upon noncomprehensive sources and have adopted simplistic search methods, both likely to lead to biased results...
  23. ncbi Existing population-based health databases: useful resources for nursing research
    Mary Beth Zeni
    College of Nursing, Florida State University, Tallahassee, FL 32306, USA
    Nurs Outlook 55:20-30. 2007
    ..of health conditions in specific groups and health disparities, can be addressed through population-based health databases. Government-funded, federal databases can provide nurse researchers with a representative sample for various ..
  24. ncbi Cardiovascular morbidity and mortality in children with chronic kidney disease in North America: lessons from the USRDS and NAPRTCS databases
    Mark M Mitsnefes
    Division of Nephrology and Hypertension, Cincinnati Children s Hospital Medical Center, Cincinnati, Ohio 45229 3039, USA
    Perit Dial Int 25:S120-2. 2005
    ..This article reviews pediatric data pertaining to CV disease obtained from the two largest renal databases in North America...
  25. ncbi Quality and completeness of SNP databases
    David E Reich
    Program in Medical and Population Genetics, Whitehead Institute MIT Center for Genome Research, One Kendall Square, Cambridge, Massachusetts 02139, USA
    Nat Genet 33:457-8. 2003
    To address the quality and completeness of single-nucleotide polymorphism (SNP) databases, we resequenced 173 kb (spanning 17 loci) in 150 chromosomes of west African and European ancestry...
  26. ncbi Drug prescriptions after acute myocardial infarction: dosage, compliance, and persistence
    Ewurabena Simpson
    Division of Clinical Epidemiology, Montreal General Hospital, Montreal, Quebec, Canada
    Am Heart J 145:438-44. 2003
    ..few studies have examined dosage and long-term compliance and persistence patterns for the use of these drugs after AMI...
  27. ncbi Identification of tryptic peptides from large databases using multiplexed tandem mass spectrometry: simulations and experimental results
    Christophe Masselon
    Pacific Northwest National Laboratory, PO Box 999, Richland, WA 99352, USA
    Proteomics 3:1279-86. 2003
    ..elegans database to which the protein sequence had been appended...
  28. ncbi Population structure of Y chromosome SNP haplogroups in the United States and forensic implications for constructing Y chromosome STR databases
    Michael F Hammer
    Division of Biotechnology, University of Arizona, Tucson, AZ 85721, USA
    Forensic Sci Int 164:45-55. 2006
    ..We infer that both inter-ethnic admixture and population structure in ancestral source populations may contribute to fine scale Y-STR heterogeneity within U.S. ethnic groups...
  29. pmc Hierarchical docking of databases of multiple ligand conformations
    David M Lorber
    University of California San Francisco, Dept of Pharmaceutical Chemistry, 1700 4 Street, QB3 Building Room 508D, San Francisco, CA 94143 2550, USA
    Curr Top Med Chem 5:739-49. 2005
    ..Molecules with even millions of conformations can be docked in a few minutes on a single desktop computer...
  30. pmc The use of cardiovascular risk factor information in practice databases: making the best of patient data
    Tom Marshall
    Senior lecturer in public health, University of Birmingham, Birmingham, UK
    Br J Gen Pract 56:600-5. 2006
    ..However, it is not known to what extent this information is already available to clinicians, or the extent to which it is used...
  31. ncbi A primer and comparative review of major US mortality databases
    Diane C Cowper
    Veterans Affairs Information Resource Center, Department of Veterans Affairs Health Service Research and Development Service Resource Center at the Edward Hines, Jr, Veterans Affairs Hospital, Hines, IL 60141 5000, USA
    Ann Epidemiol 12:462-8. 2002
    ..We reviewed the major mortality databases and mortality ascertainment services available in the United States, including the National Death Index (NDI), ..
  32. ncbi Evaluation of algorithms for protein identification from sequence databases using mass spectrometry data
    Daniel C Chamrad
    Protagen, Dortmund, Germany
    Proteomics 4:619-28. 2004
    ..The development of this high-throughput method made an intensive evaluation based on data acquired in a typical proteome project possible. Previous evaluations of PMF and PFF algorithms were mainly based on simulations...
  33. ncbi Text mining neuroscience journal articles to populate neuroscience databases
    Chiquito J Crasto
    Center for Medical Informatics, Yale University, New Haven, CT, USA
    Neuroinformatics 1:215-37. 2003
    We have developed a program NeuroText to populate the neuroscience databases in SenseLab (http://senselab.med.yale.edu/senselab) by mining the natural language text of neuroscience articles...
  34. pmc NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediation
    Chiquito J Crasto
    Center for Medical Informatics, New Haven, CT 06511, USA
    J Am Med Inform Assoc 14:355-60. 2007
    ..This project is a first step in exploring how this general approach might be used, in conjunction with other query mediation approaches, to facilitate the integration of many Internet-accessible resources relevant to the neurosciences...
  35. pmc Cross sectional survey of multicentre clinical databases in the United Kingdom
    Nick Black
    Health Services Research Unit, Department of Public Health and Policy, London School of Hygiene and Tropical Medicine, London WC1E 7HT
    BMJ 328:1478. 2004
    To describe the multicentre clinical databases that exist in the United Kingdom, to report on their quality, to explore which organisational and managerial features are associated with high quality, and to make recommendations for ..
  36. ncbi Rheumatoid arthritis databases
    Tuulikki Sokka
    Division of Rheumatology and Immunology, Department of Medicine, Vanderbilt University, 203 Oxford House, Nashville, TN 37232 4500, USA
    Rheum Dis Clin North Am 30:769-81, vi. 2004
    Rheumatoid arthritis (RA) registers and databases serve as data storage for longitudinal observational studies...
  37. ncbi False homozygosities at various loci revealed by discrepancies between commercial kits: implications for genetic databases
    Magali Delamoye
    Service de Biochimie, Faculté de médecine Paris Ouest, 104 boulevard Raymond Poincaré, 92380 Garches, France
    Forensic Sci Int 143:47-52. 2004
    ..It is suggested that databases should include information about the kits used to determine the profiles while ensuring that the primer ..
  38. ncbi Protecting patient privacy by quantifiable control of disclosures in disseminated databases
    Lucila Ohno-Machado
    Decision Systems Group, Division of Health Science and Technology, Brigham and Women s Hospital, Harvard MIT, Boston, MA 02115, USA
    Int J Med Inform 73:599-606. 2004
    ..A common practice is to remove sensitive data from databases that are disseminated to the public, but this can make the disseminated database useless for important public ..
  39. ncbi Uniform databases in early arthritis: specific measures to complement classification criteria and indices of clinical change
    T Pincus
    Vanderbilt University Medical Center, Nashville, Tennessee, USA
    Clin Exp Rheumatol 21:S79-88. 2003
    ..While these indices have greatly advanced clinical research, databases for long-term observations, including those in early RA described in this Supplement, differ in 20-50% of ..
  40. ncbi Methodologic issues in the use of workers' compensation databases for the study of work injuries with days away from work. I. Sensitivity of case ascertainment
    Arthur Oleinick
    School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA
    Am J Ind Med 45:260-74. 2004
    ..This review summarizes information on the sensitivity of state administrative databases in workers' compensation systems for the ascertainment of days-away-from-work (DAFW) work injuries for use in ..
  41. ncbi Databases of patients with early rheumatoid arthritis in the USA
    T Sokka
    Vanderbilt University Medical Center, Nashville, Tennessee, USA
    Clin Exp Rheumatol 21:S146-53. 2003
    Several databases of patients with early rheumatoid arthritis (RA) have been established in the USA...
  42. pmc Predictors of failed attendances in a multi-specialty outpatient centre using electronic databases
    Vernon J Lee
    Department of Clinical Epidemiology, Tan Tock Seng Hospital, Singapore
    BMC Health Serv Res 5:51. 2005
    ..The objective of this study is to show the factors in an existing electronic database that affect failed appointments and to develop a predictive probability model to increase the effectiveness of interventions...
  43. ncbi Identifying cumulative trauma disorders of the upper extremity in workers' compensation databases
    Dianne Zakaria
    Department of Epidemiology and Biostatistics, University of Western Ontario, London, Ontatio, Canada
    Am J Ind Med 43:507-18. 2003
    Impeding the use of workers' compensation databases for surveillance of cumulative trauma disorder of the upper extremity (CTDUE) is the lack of valid and reliable extraction strategies.
  44. ncbi A novel search engine for virtual screening of very large databases
    David Vidal
    Laboratory of Biomolecular NMR, Barcelona Biomedical Research Institute, Parc Cientific de Barcelona, Josep Samitier, 1 5 08028 Barcelona, Spain
    J Chem Inf Model 46:836-43. 2006
    Virtual screening of large chemical databases using the structure of the receptor can be computationally very demanding...
  45. pmc The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experience
    Ashokkumar A Patel
    Department of Pathology, Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh, Pittsburgh, PA, USA
    BMC Cancer 5:108. 2005
    ..To facilitate this effort, it was critical to arrive at agreed upon common data elements (CDEs) that could be used to collect demographic, pathologic, treatment and clinical outcome data...
  46. ncbi Epidemiology of nonfatal deliberate self-harm in the United States as described in three medical databases
    Cynthia A Claassen
    Mood Disorders Research Program and Clinic, USA
    Suicide Life Threat Behav 36:192-212. 2006
    ....
  47. ncbi Body MR imaging and CT volume: variations and trends based on an analysis of medicare and fee-for-service health insurance databases
    Donald G Mitchell
    Department of Radiology, Thomas Jefferson University, 1096 Main Bldg, 132 S 10th St, Philadelphia, PA 19107, USA
    AJR Am J Roentgenol 179:27-31. 2002
    ..We examined Medicare and fee-for-service data sets to understand better the utilization of MR imaging for imaging the pelvis, abdomen, and chest relative to its use in imaging for other body parts and to the utilization of CT...
  48. ncbi Mining genome databases to identify and understand new gene regulatory systems
    Gary D Stormo
    Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63110 8232, USA
    Curr Opin Microbiol 5:149-53. 2002
    ..Recent advances in computational methodology for uncovering transcriptional regulatory components and their interactions are discussed...
  49. ncbi Agreement between ethnicity recorded in two New Zealand health databases: effects of discordance on cardiovascular outcome measures (PREDICT CVD3)
    Roger J Marshall
    School of Population Health, University of Auckland, New Zealand
    Aust N Z J Public Health 31:211-6. 2007
    To assess agreement between ethnicity as recorded by two independent databases in New Zealand, PREDICT and the National Health Index (NHI), and to assess sensitivity of ethnic-specific measures of health outcomes to either ethnicity ..
  50. pmc Surgical procedure logging with use of a hand-held computer
    Sandra Fischer
    Mount Sinai Hospital and Interdepartmental Division of Critical Care, University of Toronto, Ont
    Can J Surg 45:345-50. 2002
    ..To evaluate the feasibility of incorporating hand-held computing technology in a surgical residency program, by means of hand-held devices for surgical procedure logging linked through the Internet to a central database...
  51. pmc A Taxonomic Search Engine: federating taxonomic databases using web services
    Roderic D M Page
    Division of Environmental and Evolutionary Biology, Institute of Biomedical and Life Sciences, Graham Kerr Building, University of Glasgow, Glasgow G12 8QQ, UK
    BMC Bioinformatics 6:48. 2005
    The taxonomic name of an organism is a key link between different databases that store information on that organism...
  52. ncbi [Sensitivity and accuracy of health databases in determining incidence of lymphoid malignancies in an Italian population]
    M G Calzari
    Dipartimento di Scienze Igienistiche, Microbiologiche e Biostatistiche, Universita di Modena e Reggio Emilia
    Ann Ig 18:127-36. 2006
    We examined the sensitivity and the accuracy of three health databases (hospital discharge data, death certificates and pathologic records) between 1997 and 2001 in an Italian community, to evaluate their accuracy for the diagnosis of ..
  53. pmc Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases
    Marko Srdanovic
    Weill Cornell Medical College, 1300 York Ave, New York, NY 10021, USA
    BMC Bioinformatics 6:5. 2005
    ..SigPath is an example of a complex biological database that needs to store various types of information connected by many relationships...
  54. ncbi Fast 3D molecular superposition and similarity search in databases of flexible molecules
    Andreas Kramer
    IBM Almaden Research Center, 650 Harry Road, San Jose, CA 95120, USA
    J Comput Aided Mol Des 17:13-38. 2003
    We present a new method (fFLASH) for the virtual screening of compound databases that is based on explicit three-dimensional molecular superpositions...
  55. pmc Measuring use patterns of online journals and databases
    Sandra L De Groote
    Library of the Health Sciences, University of Illinois at Chicago, 1750 West Polk Street, Chicago, Illinois 60612, USA
    J Med Libr Assoc 91:231-40. 2003
    This research sought to determine use of online biomedical journals and databases and to assess current user characteristics associated with the use of online resources in an academic health sciences center.
  56. ncbi [Infant mortality according to race/color in Brazil: what do the national databases say?]
    Andrey Moreira Cardoso
    Centro de Vigilancia Epidemiologica, Secretaria de Estado de Saúde do Rio de Janeiro, Rio de Janeiro, Brazil
    Cad Saude Publica 21:1602-8. 2005
    ..0% to 90.0% higher than that of white or brown children. It is hoped that improved recording in the SIM and SINASC databases will allow a more in-depth discussion of health inequalities according to race, color, and ethnicity in Brazil.
  57. ncbi [The role of electronic databases in practical decision making in the care of patients with cerebrovascular diseases]
    Daniel Bereczki
    Debreceni Egyetem Orvos és Egészségtudományi Centrum, Neurológiai Klinika
    Orv Hetil 143:1353-9. 2002
    ..This paper summarises the most important electronic databases that can be used in the care of patients with cerebrovascular diseases...
  58. ncbi Databases and tools for browsing genomes
    Ewan Birney
    European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom
    Annu Rev Genomics Hum Genet 3:293-310. 2002
    ..This article reviews the database systems and tools for analysis that have so far been developed to address this...
  59. ncbi Individual variability in brain activations associated with episodic retrieval: a role for large-scale databases
    Michael B Miller
    Department of Psychology, University of California, Santa Barbara, CA, USA
    Int J Psychophysiol 63:205-13. 2007
    ..We argue that individual analyses in conjunction with group analyses are likely to be critical in fully understanding the relationship between retrieval processes and underlying neural systems...
  60. ncbi A dynamic problem to knowledge linking Semantic Web service based on clinical codes
    M N Kamel Boulos
    Centre for Measurement and Information in Medicine, School of Informatics, City University, Northampton Square, London, EC1V 0HB, UK
    Med Inform Internet Med 27:127-37. 2002
    ..The actual success of the system will depend on the quality and granularity of metadata it uses and the topical coverage and quality of resources to which it points...
  61. ncbi Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology
    Julia V Ponomarenko
    San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093 0537, USA
    Proteins 58:855-65. 2005
    ..The effect of superfolds (folds with many functions) is considered and, by comparison to the Structural Classification of Proteins (SCOP), the individual effects of family, superfamily, and fold...
  62. ncbi Identification and characterization of ARHGAP24 and ARHGAP25 genes in silico
    Masuko Katoh
    M and M Medical BioInformatics, Narashino 275 0022, Japan
    Int J Mol Med 14:333-8. 2004
    ..This is the first report on identification and characterization of the ARHGAP24 and ARHGAP25 genes...
  63. ncbi Patterns of gene expression in the developing adult sea urchin central nervous system reveal multiple domains and deep-seated neural pentamery
    Belinda J Sly
    Indiana Molecular Biology Institute and Department of Biology, Indiana University, Bloomington 47405, USA
    Evol Dev 4:189-204. 2002
    ..The transcription patterns reflect the morphological pentamery of the echinoderm CNS and provide no indication of an underlying functional bilateral symmetry in the CNS...
  64. ncbi Identification and characterization of Crumbs homolog 2 gene at human chromosome 9q33.3
    Masuko Katoh
    M and M Medical BioInformatics, Narashino 275 0022, Japan
    Int J Oncol 24:743-9. 2004
    ..3 and CRB1-MGC27044-LHX9-NEK7 locus at human chromosome 1q31.3 were paralogous regions within the human genome. This is the first report on identification and characterization of the CRB2 gene...
  65. ncbi Identification and characterization of human and mouse ovastacin: a novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fish
    Victor Quesada
    Departamento de Bioquimica y Biologia Molecular and Morfologia y Biologia Celular, Facultad de Medicina, Instituto Universitario de Oncologia, Universidad de Oviedo, 33006 Oviedo, Spain
    J Biol Chem 279:26627-34. 2004
    ..On the basis of these results, we suggest that ovastacin could play in mammals a physiological function similar to that performed by hatching proteases in evolutionary distant species from arthropods to fish...
  66. ncbi A real-time and dynamic biological information retrieval and analysis system (BIRAS)
    Qi Zhou
    Department of Genomics and Proteomics, Beijing Institute of Radiation Medicine, Beijing 100850, China
    Genomics Proteomics Bioinformatics 1:74-7. 2003
    ..the user-defined information, it is believed that BIRAS would be extensively used to retrieve specific information from large amount of biological databases in now days. The program is available on request from the corresponding author.
  67. pmc GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments
    S A Kirov
    Graduate School for Genome Science and Technology, Oak Ridge National Laboratory University of Tennessee, Oak Ridge, USA
    BMC Bioinformatics 6:72. 2005
    The analysis of biological data is greatly enhanced by existing or emerging databases. Most existing databases, with few exceptions are not designed to easily support large scale computational analysis, but rather offer exclusively a web ..
  68. ncbi Architecture of the herpes simplex virus major capsid protein derived from structural bioinformatics
    Matthew L Baker
    National Center for Macromolecular Imaging, Baylor College of Medicine, Houston, TX 77030, USA
    J Mol Biol 331:447-56. 2003
    ..The combined structural and sequence-based informatics has led to an architectural model of VP5. This model placed in the context of the capsid provides insights into the strategies used to achieve viral capsid stability...
  69. ncbi A multidomain TIGR/olfactomedin protein family with conserved structural similarity in the N-terminal region and conserved motifs in the C-terminal region
    Michelle L Green
    Stanford Medical Informatics, Stanford University School of Medicine, Stanford, California 94305 5479, USA
    Mol Cell Proteomics 1:394-403. 2002
    ..Additionally, we have identified a group of chitinase sequences containing several of the highly conserved motifs present in the C-terminal region of the olfactomedin domain-containing sequences...
  70. ncbi Disruption of the mthfd1 gene reveals a monofunctional 10-formyltetrahydrofolate synthetase in mammalian mitochondria
    Karen E Christensen
    Department of Biochemistry, McGill University, Montreal, Quebec H3G 1Y6, Canada
    J Biol Chem 280:7597-602. 2005
    ..This monofunctional synthetase completes the pathway for the production of formate from formyltetrahydrofolate in the mitochondria in our model of mammalian one-carbon folate metabolism in embryonic and transformed cells...
  71. ncbi Promoter classifier: software package for promoter database analysis
    Naum I Gershenzon
    Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, USA
    Appl Bioinformatics 4:205-9. 2005
    ..The program Promoter Divider is described in more detail as a representative component of the package...
  72. ncbi Service-oriented science
    Ian Foster
    Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA, and Department of Computer Science, University of Chicago, Chicago, IL 60637, USA
    Science 308:814-7. 2005
    ..Grid technologies can accelerate the development and adoption of service-oriented science by enabling a separation of concerns between discipline-specific content and domain-independent software and hardware infrastructure...
  73. pmc GeneNotes--a novel information management software for biologists
    Pengyu Hong
    BioX program, Department of Statistics and HRP, Stanford University, Stanford, CA 94305 4065, USA
    BMC Bioinformatics 6:20. 2005
    Collecting and managing information is a challenging task in a genome-wide profiling research project. Most databases and online computational tools require a direct human involvement...
  74. ncbi The informatics of a C57BL/6J mouse brain atlas
    Allan MacKenzie-Graham
    Laboratory of Neuro Imaging, Department of Neurology, University of California, Los Angeles, CA, USA
    Neuroinformatics 1:397-410. 2003
    ..A comprehensive framework that encompasses many forms of information in the context of anatomic imaging holds tremendous promise for producing new insights. The atlas and associated tools can be found at http://www.loni.ucla.edu/MAP...
  75. pmc Atlas - a data warehouse for integrative bioinformatics
    Sohrab P Shah
    UBC Bioinformatics Centre, University of British Columbia, Vancouver, BC, Canada
    BMC Bioinformatics 6:34. 2005
    ..The goal of the system is to provide data, as well as a software infrastructure for bioinformatics research and development...
  76. ncbi IMGT-Choreography for immunogenetics and immunoinformatics
    Marie Paule Lefranc
    Universite Montpellier II, Laboratoire d ImmunoGenetique Moleculaire LIGM, UPR CNRS 1142, Institut de Genetique Humaine IGH, 141 rue de la Cardonille, 34396 Montpellier Cedex 5, France
    In Silico Biol 5:45-60. 2005
    ..We are developing Web services to automatically query IMGT databases and tools...
  77. pmc Improving interoperability between microbial information and sequence databases
    Paolo Romano
    Bioinformatics and Structural Proteomics, National Cancer Research Institute, Largo Rosanna Benzi 10, I 16132, Genova, Italy
    BMC Bioinformatics 6:S23. 2005
    ..Identification of links to sequence databases can be useful, but annotation and indexing problems, together with compilation errors, immediately arise...
  78. ncbi Presentation of differentially regulated proteins within a web-accessible proteome database system of microorganisms
    Klaus Peter Pleissner
    Core Facility Bioinformatics, Max Planck Institute for Infection Biology, Berlin, Germany
    Proteomics 4:2987-90. 2004
    Web-accessible proteome databases represent indispensable tools for quantitative and comparative proteomics research...
  79. ncbi YeastHub: a semantic web use case for integrating data in the life sciences domain
    Kei Hoi Cheung
    Center for Medical Informatics, Yale University New Haven, CT 06520, USA
    Bioinformatics 21:i85-96. 2005
    ....
  80. pmc Chemistry in bioinformatics
    Peter Murray-Rust
    Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
    BMC Bioinformatics 6:141. 2005
    ..We argue that the technology is already available; we require a collective agreement to enhance publication protocols...
  81. ncbi From XML to RDF: how semantic web technologies will change the design of 'omic' standards
    Xiaoshu Wang
    Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, 135 Cannon St Suite 303, Charleston, South Carolina 29403 5720, USA
    Nat Biotechnol 23:1099-103. 2005
    ..In the present article, we discuss why semantic web technologies, as recommended by the World Wide Web consortium (W3C), expand current data standard technology for biological data representation and management...
  82. ncbi Efficient prediction of alternative splice forms using protein domain homology
    Michael Hiller
    Friedrich Schiller Universitaet Jena, Institute of Computer Science, Chair for Bioinformatics, Ernst Abbe Platz 1 4, D 07743 Jena, Germany
    In Silico Biol 4:195-208. 2004
    ..To this end, we have developed an efficient polynomial-time algorithm, called ASFPred (Alternative Splice Form Prediction). This algorithm needs only a set of exons as input...
  83. ncbi Reliability of transmembrane predictions in whole-genome data
    LUKAS KALL
    Center for Genomics and Bioinformatics, Karolinska Institutet, 17177, Stockholm, Sweden
    FEBS Lett 532:415-8. 2002
    ..We have also analyzed which programs are most prone to make mispredictions by measuring the frequency of one-out-of-five disagreeing predictions...
  84. ncbi Reliability measures for membrane protein topology prediction algorithms
    Karin Melén
    Department of Biochemistry and Biophysics, Stockholm Bioinformatics Center, Stockholm University, SE 106 91 Stockholm, Sweden
    J Mol Biol 327:735-44. 2003
    ....
  85. ncbi Global gene expression analysis by combinatorial optimization
    Adam Ameur
    SICS, Swedish Institute of Computer Science, P O Box 1263, S 164 29 Kista, Sweden
    In Silico Biol 4:225-41. 2004
    ..We present two variants of the method. One uses state-of-the-art commercial software for solving problems of this kind, the other a code developed by us specifically for this purpose, released in the public domain under GPL license...
  86. ncbi Comparison of character-level and part of speech features for name recognition in biomedical texts
    Nigel Collier
    National Institute of Informatics, 2 1 2 Hitotsubashi, Chiyoda ku, Tokyo 101 8430, Japan
    J Biomed Inform 37:423-35. 2004
    ..to aid in fact extraction, document screening, citation analysis, and linkage with large gene and gene-product databases. In particular there has been an intensive investigation into the named entity (NE) task as a core technology in ..
  87. ncbi Enhancing HMM-based biomedical named entity recognition by studying special phenomena
    Jie Zhang
    Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore
    J Biomed Inform 37:411-22. 2004
    ..To our best knowledge, our system is the first one that copes with the cascaded phenomena...
  88. ncbi The next step in systems biology: simulating the temporospatial dynamics of molecular network
    Hao Zhu
    Bioinformatics Institute of Singapore, Singapore
    Bioessays 26:68-72. 2004
    ..The aim of this paper is to present a brief and informative, but not all-inclusive, viewpoint on the computational aspects of modeling and simulation of a non-static molecular network...
  89. ncbi Tissue distribution and evolution of fructosamine 3-kinase and fructosamine 3-kinase-related protein
    Jerome Delplanque
    Laboratory of Physiological Chemistry, Christian de Duve Institute of Cellular Pathology and Universite catholique de Louvain, Avenue Hippocrate 75, B 1200 Brussels, Belgium
    J Biol Chem 279:46606-13. 2004
    ..This finding, together with the high affinity of FN3K-RP for ribulosamines, suggests that this enzyme may serve to repair damage caused by the powerful glycating agent, ribose 5-phosphate...
  90. ncbi Unraveling protein interaction networks with near-optimal efficiency
    Michael Lappe
    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nat Biotechnol 22:98-103. 2004
    ..Using this strategy, we estimate that 90% of the human interactome can be covered by 10,000 pull-down experiments, with 50% of the interactions confirmed by reciprocal pull-down experiments...
  91. ncbi Biomedical named entity recognition using two-phase model based on SVMs
    Ki Joong Lee
    Natural Language Processing Laboratory, Department of Computer Science and Engineering, Korea University, 1, 5 Ka, Anam Dong, Seoul 136 701, Republic of Korea
    J Biomed Inform 37:436-47. 2004
    ..The F-score (beta=1) for the boundary identification is 74.8 and the F-score for the semantic classification is 66.7...
  92. ncbi Computational analysis of shotgun proteomics data
    Michael J MacCoss
    Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, K307, Box 357730, Seattle, WA 98195 7730, USA
    Curr Opin Chem Biol 9:88-94. 2005
    ..This review discusses current approaches for analyzing proteomics data by mass spectrometry and identifies present computational limitations and bottlenecks...
  93. pmc Phylogenetic analysis of the formin homology 2 domain
    Henry N Higgs
    Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA
    Mol Biol Cell 16:1-13. 2005
    ..This analysis allows for a formin nomenclature system based on sequence relationships, as well as suggesting strategies for the determination of biochemical and cellular activities of these proteins...
  94. ncbi Filtering remote homologues using predicted structural information
    Katsunori Uehara
    Graduate School of Information Science, Nara Institute of Science and Technology, Ikoma, Nara 630 0192, Japan
    Protein Eng Des Sel 17:565-70. 2004
    ..The advantage of our method is its easy implementation with fewer parameters to be tuned and faster computation. We also discuss its performance with predicted and observed secondary structures...
  95. ncbi Structural characterization of NETNES, a novel glycoconjugate in Trypanosoma cruzi epimastigotes
    James I Macrae
    Division of Biological Chemistry and Molecular Microbiology, University of Dundee, Scotland, United Kingdom
    J Biol Chem 280:12201-11. 2005
    ..cruzi genome data base. These genes are predicted to encode 65-amino acid proteins with cleavable 26-amino acid N-terminal signal peptides and 26-amino acid C-terminal GPI addition signal peptides...
  96. ncbi Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancy
    Chandana B Herath
    Laboratory of Reproductive Biology and Technology, National Institute of Agrobiological Sciences, Tsukuba City, Ibaraki 305 8602, Japan
    Biochem Biophys Res Commun 313:666-80. 2004
    ..Of which, 1442 were known genes while 617 sequences had matches with sequences found in expressed sequence tags databases. In addition, 616 unknown sequences were found and these sequences may possibly be identified as candidates for ..
  97. ncbi Identification and characterization of human FCHO2 and mouse Fcho2 genes in silico
    Masuko Katoh
    M and M Medical BioInformatics, Narashino 275 0022, Japan
    Int J Mol Med 14:327-31. 2004
    ..elegans 2B609 were found consisting of N-terminal FCH domain and C-terminal FOH domain. This is the first report on identification and characterization of evolutionarily conserved FCHO homologs as well as the novel FOH domain...
  98. ncbi Solution structure and DNA binding of the zinc-finger domain from DNA ligase IIIalpha
    Arkadiusz W Kulczyk
    MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK
    J Mol Biol 341:723-38. 2004
    ..Likely implications for DNA binding are discussed...
  99. ncbi Fbx7 functions in the SCF complex regulating Cdk1-cyclin B-phosphorylated hepatoma up-regulated protein (HURP) proteolysis by a proline-rich region
    Jung Mao Hsu
    Division of Molecular and Genomic Medicine, National Health Research Institutes, Taipei 115, Taiwan
    J Biol Chem 279:32592-602. 2004
    ..Taken together, these findings further expound the diverse substrate-recognition abilities of the SCF complexes...
  100. ncbi Home care delivery through the mobile telecommunications platform: the Citizen Health System (CHS) perspective
    N Maglaveras
    Lab of Medical Informatics, The Medical School, Aristotelian University, Box 323, 54124, Macedonia, Thessaloniki, Greece
    Int J Med Inform 68:99-111. 2002
    ....
  101. ncbi Desktop and mobile software development for surgical practice
    Leslie Oyama
    Division of Pediatric Surgery, Department of Surgery, Boston University School of Medicine, Boston, MA, USA
    J Pediatr Surg 37:477-81. 2002
    ..The aim of this study was to develop a mobile software solution that will merge patient data with a centralized patient database, aid surgical decision making, and document clinical services...

Research Grants80

  1. STATISITICAL DESIGN, MONITORING &COORD. OF VISION CLINICAL TRIALS &EPIDEMIOLOGY
    Keri Hammel; Fiscal Year: 2012
    ..This will include, but not be limited to, the following areas: analysis of Medicare and other health care databases;evaluation of existing NEI databases such as, centralized NEI Intramural Research database, the Eye Disease Case ..
  2. STATISITICAL DESIGN, MONITORING &COORD. OF VISION CLINICAL TRIALS &EPIDEMIOLOGY
    Keri Hammel; Fiscal Year: 2013
    ..This will include, but not be limited to, the following areas: analysis of Medicare and other health care databases;evaluation of existing NEI databases such as, centralized NEI Intramural Research database, the Eye Disease Case ..
  3. High Throughput Genotyping and DNA Sequencing for Studying the Genetic Contributi
    Sonia Dua; Fiscal Year: 2013
    ..Ensure data accuracy by uploading (as from spreadsheets) or extracting (as from databases) data from existing electronic sources...
  4. National Network of Libraries of Medicine (NN/LM) Region 2
    DENNIS PATTRATH; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  5. National Network of Libraries of Medicine (NN/LM) Region 2
    Javier Crespo; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  6. National Network of Libraries of Medicine - Region 2
    JM J TOOEY; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  7. National Network of Libraries of Medicine - Region 2
    JM J TOOEY; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  8. National Network of Libraries of Medicine - Region 2
    JM J TOOEY; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  9. National Network of Libraries of Medicine (NN/LM) Region 3
    Ruth Holst; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  10. Vaccine Development for Falciparum Malaria in Pregnant Women and Their Offspring
    Ian C Michelow; Fiscal Year: 2013
    ..manipulate malaria parasites, perform cell-based infection assays, interrogate the malaria genome/proteome databases, use sophisticated cell imaging technologies, model complex data using advanced statistical methods to account ..
  11. National Network of Libraries of Medicine (NN/LM) Region 3
    Ruth Holst; Fiscal Year: 2009
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  12. National Network of Libraries of Medicine - Region 3
    Ruth Holst; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  13. National Network of Libraries of Medicine - Region 3
    Ruth Holst; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  14. National Network of Libraries of Medicine - Region 3
    Ruth Holst; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  15. National Network of Libraries of Medicine (NN/LM) region 4
    Claire Hamasu; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  16. National Network of Libraries of Medicine (NN/LM) region 4
    Claire Hamasu; Fiscal Year: 2009
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  17. National Network of Libraries of Medicine (NN/LM) Region 5
    MICHELLE MALIZIA; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  18. National Network of Libraries of Medicine (NN/LM) Region 6
    CATHY BURROUGHS; Fiscal Year: 2009
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  19. National Network of Libraries of Medicine (NN/LM) Region 5
    MICHELLE MALIZIA; Fiscal Year: 2009
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  20. Prospective studies of cancer etiology and prevention in Shanghai and Singapore
    Jian Min Yuan; Fiscal Year: 2013
    ..These databases have been serving unique resources for a large number of projects for research on cancer etiology and prevention...
  21. National Network of Libraries of Medicine (NN/LM) Region 7
    TAMARA COMBS; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  22. National Network of Libraries of Medicine - Region 4
    HAMASU CLAIRE; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  23. National Network of Libraries of Medicine - Region 8
    Javier Crespo; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  24. National Network of Libraries of Medicine - Region 4
    HAMASU CLAIRE; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  25. Genetics and Haloperidol Response
    Robert J Hitzemann; Fiscal Year: 2012
    ..The SNP data will also be used to mask striatal gene expression databases to determine which genes (actually transcripts) within the QTL intervals show strong cis-regulation and strain ..
  26. National Network of Libraries of Medicine - Region 8
    Javier Crespo; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  27. National Network of Libraries of Medicine - Region 8
    Javier Crespo; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  28. National Network of Libraries of Medicine - Region 4
    HAMASU CLAIRE; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  29. National Network of Libraries of Medicine (NN/LM) Region 1
    Colleen Cuddy; Fiscal Year: 2010
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  30. National Network of Libraries of Medicine - Region 6
    CATHY BURROUGHS; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  31. National Network of Libraries of Medicine - Region 6
    CATHY BURROUGHS; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  32. National Network of Libraries of Medicine (NN/LM) Region 1
    KATE BURR OLIVER; Fiscal Year: 2009
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  33. National Network of Libraries of Medicine - Region 6
    CATHY BURROUGHS; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  34. National Network of Libraries of Medicine - Region 5
    MICHELLE MALIZIA; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  35. National Network of Libraries of Medicine - Region 5
    MICHELLE MALIZIA; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  36. National Network of Libraries of Medicine - Region 5
    MICHELLE MALIZIA; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  37. Community Participation Research of Breastfeeding Disparities in African American
    Tamar Ringel Kulka; Fiscal Year: 2009
    ..Data collection will include the use of secondary/existing databases for general demographics and breastfeeding patterns in Durham County as well as primary data collected via focus ..
  38. THE ETHICS OF POST-CONFLICT AND POST-DISASTER DNA IDENTIFICATION
    Sarah Wagner; Fiscal Year: 2013
    ..trust, data ownership, informed consent, and illicit use associated with the creation of large genetic databases in countries emerging from conflict or disaster...
  39. National Network of Libraries of Medicine - Region 7
    Julie Kwan; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  40. National Network of Libraries of Medicine - Region 7
    Julie Kwan; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  41. National Network of Libraries of Medicine - Region 7
    Julie Kwan; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  42. National Network of Libraries of Medicine - Region 1
    BARBARA EPSTEIN; Fiscal Year: 2012
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  43. National Network of Libraries of Medicine - Region 1
    BARBARA EPSTEIN; Fiscal Year: 2013
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  44. National Network of Libraries of Medicine - Region 1
    BARBARA EPSTEIN; Fiscal Year: 2011
    ..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
  45. Exome re-sequencing candidate loci for familial essential tremor
    Barry E Kosofsky; Fiscal Year: 2012
    ..Advances in genome bioinformatics and the availability of validated normative population databases (e.g...
  46. C. Difficile Outcomes and Effectiveness of Treatment Strategies in SCI
    Charlesnika T Evans; Fiscal Year: 2013
    ..This is an important project with a strong study team. 2. Discussion of how multiple events from the same patient will be handled is needed. 3. How guarding against chance findings and selection of the validation cases is needed. ..
  47. Aryl Hydrocarbon Receptor Modulators for the Treatment of Hepatocellular Carcinom
    Siva Kumar Kolluri; Fiscal Year: 2012
    ..These homology models of the AhR will be used to screen both synthetic and natural compound databases by VLS to identify potential binders of the AhR...
  48. RADIATION-INDUCED THYROID CANCER
    Heinz Ulrich G Weier; Fiscal Year: 2011
    ..rearrangements, we will identify genes that map at or near the chromosomal breakpoints using publicly available databases and bioinformatics tools...
  49. Improving Patient Safety: Context and Nurses'Work Processes for Pressure Ulcers
    Lynn M Soban; Fiscal Year: 2013
    ..VANOD was not created for research, but many VA databases created for clinical purposes are used in studies especially when other data are not available. 2...
  50. Graves'Disease Therapy Risks to Mother and Fetus
    Scott A Rivkees; Fiscal Year: 2013
    ..Cohort studies will be performed using large clinical databases, including those of Marketscan (>1...
  51. Biosynthesis of Microbial Isoprenoids
    David E Cane; Fiscal Year: 2013
    ..mechanistic and structural characterization of three broad classes of proteins uncovered by mining of genomic databases and functional gene expression that present novel structural, mechanistic, or biological features: 1) ..
  52. Design of a Multicenter Clinical Trial of Allopurinol to Prevent GFR Loss in T1D
    S MICHAEL MAUER; Fiscal Year: 2011
    ..To finalize the Study Protocol;2.To identify the best site specific mechanisms to query the respective patient databases for the quickest identification of eligible subjects;3.To prepare a Manual of Operation;4...
  53. Dopamine Transporter Structure and Function
    Christopher K Surratt; Fiscal Year: 2010
    ..dopamine transporter (DAT) interacts with its CNS-active inhibitors;such maps will be used to screen structural databases for novel compounds that function at the DAT...
  54. Innate Immunity, Biomarkers and Myocardial Infarction
    Gregory L Stahl; Fiscal Year: 2010
    ..to quantify the complement components within the MBL pathway so we can screen human sera repositories and databases to evaluate the role of MBL in human disease...
  55. Core Center for BioBehavioral Sciences of Communication Disorders
    Mabel L Rice; Fiscal Year: 2013
    ..Specifically, PARC has designed a number of databases geared towards targeting households for recruitment and keeping track of individuals'participation in ..
  56. Defining the functions of uncharacterized genes in priority pathogens
    Sean Crosson; Fiscal Year: 2013
    ..provided by applicant): Understanding the functions of the thousands of uncharacterized genes in sequence databases is among the most significant challenges in biology...
  57. Mutational Cloning in Familial Dementia and Alzheimers Disease
    Wendy H Raskind; Fiscal Year: 2010
    ..will deposit FD genotype and phenotype information into the on-line resources GeneTests and the NCBI Variation Databases (dbSNP and dbGaP)...
  58. Characterizing Mitochondrial DNA Susceptibility to Breast, Colorectal, and Prosta
    Iona Cheng; Fiscal Year: 2012
    ..will abstract sequencing data for African Americans, Japanese Americans, Latinos, and Whites from public mtDNA databases, in parallel with sequencing Native Hawaiians (225 controls), a group that is not represented in public ..
  59. Chicago Community-Acquired Pneumonia Consortium
    Richard G Wunderink; Fiscal Year: 2010
    ..We will use an innovative geographic analysis based on zip code and public databases to determine the population-based incidence...
  60. Host Genetic Epidemiology in HIV-1-Discordant African Couples and Other Cohorts
    Jianming Tang; Fiscal Year: 2012
    ..Related new candidate genes will be considered. Public bioinformatics databases, genome-level sequencing services, and state-of-the-art laboratory techniques will be used to detect ..
  61. REACTIVE OXYGEN SPECIES AND AGING
    Elias K Michaelis; Fiscal Year: 2012
    ..Core A, B and C were all expanded to include enhanced data sharing, relational databases, and bioinformatics analytical tools for systematic integration of the information from the Projects...
  62. STATINS AND ACE INHIBITORS IN ADULTS WITH DIABETES AND COMORBID CONDITIONS
    David E Grembowski; Fiscal Year: 2010
    ....
  63. USING CLAIMS DATA FOR CANCER SURVEILLANCE
    Lynne Penberthy; Fiscal Year: 2000
    ..These databases, however, have the limitations of minimal clinical content and association with billing activities...
  64. Multi-source clinical Question Answering system
    Guergana Savova; Fiscal Year: 2010
    ..query that will result in a search that appears to "understand" the question, a search that inspects multiple databases and brings findings together into a useful answer...
  65. A Bridge Between the Academic and Clinical Setting: Evi*
    Rebecca Craik; Fiscal Year: 2003
    ..Obstacles preventing health care providers from using databases such as PubMed or Medline to answer clinical questions include: lack of access to Internet, lack of skills to ..
  66. Digital Liberary Access-Rural Taylor County, Kentucky
    MICHELE DICKENS; Fiscal Year: 2004
    ..Aim 2: To provide online access to free databases and electronic resources such as NLM's MEDLINE and to subscription databases such as OVID, MDConsult, the ..
  67. HERMES - Help physicians to Extract and aRticulate Multimedia information from li
    Hong Yu; Fiscal Year: 2009
    ..Many medical databases (e.g...
  68. Towards the Building of a Comprehensive Searchable Biological Experiment Database
    Hong Yu; Fiscal Year: 2009
    ..2001;Rzhetsky et al. 2004), iHOP (Hoffmann and Valencia 2005), and BioMedQA (Lee et al. 2006a), and annotated databases (e.g., SWISSPROT, OMIM (Hamosh et al. 2005) and BIND (Alfarano et al. 2005))...
  69. Vector Surveillance Ontology and Vector Management Ontology
    Saul Lozano Fuentes; Fiscal Year: 2010
    ..will provide standardization of terminology, inform database schemas, facilitate linkage of data from fragmented databases (e.g...
  70. Non-Intrusive Automated Portable Data Collection System for Aging Surveys
    Cindy Crump; Fiscal Year: 2009
    ..dramatically improves the value of household surveys by adding a rich dataset of information to longitudinal databases that is not collected today...
  71. Identifying Low-Risk Patients with Pulmonary Embolism
    Drahomir Aujesky; Fiscal Year: 2005
    ..This is a retrospective cohort study using 3 large and reliable databases, the PHC4 database, the MediQual Atlas database, and the National Death Index (NDI)...
  72. Oral Health Disparities Among Medicaid Beneficiaries
    Sujha Subramanian; Fiscal Year: 2010
    ..identify comparison groups, including those insured by private payers and Medicare) linked with cancer registry databases to address three specific objectives: (1) assess the ability to study the special needs population and ..
  73. Specialized Centers for Cell-Based Therapy for NHLBI an*
    Shelly Carter; Fiscal Year: 2009
    ..characteristics and preclinical and clinical outcome data;assess availability and potential use of existing databases including development of common data elements;provide a web-based catalog of cellular products for potential use ..
  74. Statistical Innovations in Health Services Research
    Joseph Gardiner; Fiscal Year: 2009
    DESCRIPTION (Provided by Applicant): Studies of healthcare utilization from national and state administrative databases have been stymied by a lack of powerful methodological approaches to circumvent deficiency of specificity often ..
  75. dbVision: A Toolbox for bioimage databases
    Kaushal Solanki; Fiscal Year: 2009
    ..together with the lack of a central and searchable repository for images of all sorts (analogous to DNA sequence databases) is a major impediment to progress in essentially all fields under the general description of molecular and ..
  76. Evaluating Effectiveness of a Statewide Public Mental Health Re-entry Program
    Stephanie Hartwell; Fiscal Year: 2010
    ..Abstract The purpose of this study is to combine existing administrative databases to evaluate the effectiveness of a statewide re-entry program for people with mental illness exiting corrections...
  77. CLINICAL SEARCH RETRIEVAL FROM FOUR ELECTRONIC DATABASES
    R Haynes; Fiscal Year: 2007
    ..relevant and scientifically sound reports from large, general purpose, biomedical research bibliographic databases such as MEDLINE...
  78. LONGITUDINAL STUDY OF NEIGHBORHOOD PREDICTORS OF CVD
    Jan Sundquist; Fiscal Year: 2005
    Background: There are few comprehensive databases that allow for a longitudinal examination of how neighborhood-level factors may interact with individual characteristics to predict incident cases of cardiovascular disease (CVD) and all-..
  79. DATA MINING AND MODEL BUILDING IN MEDICAL INFORMATICS
    Bruce Buchanan; Fiscal Year: 2001
    ..goal is to assist biomedical scientists by extracting and codifying new knowledge from large biomedical databases routinely by computer...
  80. PathMiner: Web Telemicroscopy & Intelligent Databases
    DAVID FORAN; Fiscal Year: 2004
    ..The IA subsystem performs multivariate indexing and remote management of databases. The IGDS subsystem supports submission of queries across networks in order to automatically locate and retrieve ..