Genomes and Genes
Summary: Organized collections of computer records, standardized in format and content, that are stored in any of a variety of computer-readable modes. They are the basic sets of data from which computer-readable files are created. (from ALA Glossary of Library and Information Science, 1983)
Publications215 found, 100 shown here
- Measuring disease prevalence: a comparison of musculoskeletal disease using four general practice consultation databasesKelvin Jordan
Primary Care Musculoskeletal Research Centre, Keele University, Keele
Br J Gen Pract 57:7-14. 2007..Primary care consultation data are an important source of information on morbidity prevalence. It is not known how reliable such figures are...
- Establishment of a universal size standard strain for use with the PulseNet standardized pulsed-field gel electrophoresis protocols: converting the national databases to the new size standardSusan B Hunter
Centers for Disease Control and Prevention, 1600 Clifton Rd, Mail Stop C03, Atlanta, GA 30333, USA
J Clin Microbiol 43:1045-50. 2005..The increasing number of databases, difficulty in identifying an organism-specific standard for each database, the increased range of band sizes ..
- Use of administrative data or clinical databases as predictors of risk of death in hospital: comparison of modelsPaul Aylin
Dr Foster Unit, Imperial College London, London EC1A 9LA
BMJ 334:1044. 2007..in hospital based on an administrative database with published results based on data derived from three national clinical databases: the national cardiac surgical database, the national vascular database and the colorectal cancer study.
- Beyond emotion archetypes: databases for emotion modelling using neural networksRoddy Cowie
School of Psychology, Queen s University Belfast
Neural Netw 18:371-88. 2005..Several schemes are emerging as candidates for describing pervasive emotion. The major contemporary databases are listed, emphasising those which are naturalistic or induced, multimodal, and influential.
- Finding fusion genes resulting from chromosome rearrangement by analyzing the expressed sequence databasesYoonsoo Hahn
Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 4264, USA
Proc Natl Acad Sci U S A 101:13257-61. 2004..a semiautomatic procedure for identifying fusion gene transcripts by using publicly available mRNA and EST databases. With this procedure, we have identified 96 transcript sequences that are derived from 60 known fusion genes...
- Did intense adverse media publicity impact on prescribing of paroxetine and the notification of suspected adverse drug reactions? Analysis of routine databases, 2001-2004Richard M Martin
Department of Social Medicine, University of Bristol, Bristol, UK
Br J Clin Pharmacol 61:224-8. 2006..To document the impact on clinical practice in England of media attention around possible adverse effects of paroxetine...
- Towards using administrative databases to measure population-based indicators of quality of end-of-life care: testing the methodologyEva Grunfeld
Cancer Outcomes Research Program, Cancer Care Nova Scotia, Dalhousie University, Halifax, Canada
Palliat Med 20:769-77. 2006..a retrospective cohort approach, we assessed the feasibility, validity and reliability of using administrative databases to measure quality indicators of end-of-life care in two Canadian provinces...
- Data mining for signals in spontaneous reporting databases: proceed with cautionWendy P Stephenson
Wendy Stephenson and Associates LLC, Maple Glen, PA 19002, USA
Pharmacoepidemiol Drug Saf 16:359-65. 2007....
- Cancer patient flows discovery in DRG databasesNicolas Jay
Laboratoire SPI EAO, Faculty of Medecine, Nancy, France
Stud Health Technol Inform 124:725-30. 2006..This unsupervised conceptual clustering method allowed us to describe patients flows with an easily understandable visual representation...
- Intelligent databases assist transparent and sound economic valuation of ecosystem servicesFerdinando Villa
Ecoinformatics Collaboratory, Gund Institute for Ecological Economics, University of Vermont, Burlington, VT 05401, USA
Environ Manage 39:887-99. 2007..This has brought to light the importance of environmental valuation databases, which provide reliable valuation data to inform secondary valuation with enough detail to enable the transfer ..
- Laparoscopic vs open colectomy: outcomes comparison based on large nationwide databasesUlrich Guller
Department of Surgery, Duke University Medical Center, Durham, NC, USA
Arch Surg 138:1179-86. 2003..Laparoscopic colectomy has significant advantages over open colectomy in the treatment of diverticular disease with respect to the length of hospital stay, routine hospital discharge, and postoperative morbidity and mortality...
- Nursing sensitive databases: their existence, challenges, and importanceG Rumay Alexander
University of North Carolina at Chapel Hill School of Nursing, Chapel Hill, North Carolina, USA
Med Care Res Rev 64:44S-63S. 2007..This article summarizes existing data sources and recommendations for improving measures, data collection, and research on nurse-sensitive care...
- The evolution of DNA databases--recommendations for new European STR lociPeter Gill
Forensic Science Service, Birmingham, UK
Forensic Sci Int 156:242-4. 2006..This will increase the number of European standard Interpol loci from 7 to 10...
- Searching biomedical databases on complementary medicine: the use of controlled vocabulary among authors, indexers and investigatorsLinda S Murphy
Science Library Reference Department, University of California, Irvine 926233 9557, USA
BMC Complement Altern Med 3:3. 2003..We hypothesized that authors, investigators and indexers in four biomedical databases are not consistent in their use of terminology in Complementary and Alternative Medicine (CAM).
- Ultrafast shape recognition to search compound databases for similar molecular shapesPedro J Ballester
Physical and Theoretical Chemistry Laboratory, University of Oxford, South Parks Road, OX1 3QZ, United Kingdom
J Comput Chem 28:1711-23. 2007..Despite its extremely fast comparison rate, USR will be shown to be highly accurate at describing, and hence comparing, molecular shapes...
- Lack of findings for the association between obesity risk and usual sugar-sweetened beverage consumption in adults--a primary analysis of databases of CSFII-1989-1991, CSFII-1994-1998, NHANES III, and combined NHANES 1999-2002Sam Z Sun
Regulatory, Nutritional and Scientific Affairs Group, James R Randall Research Center, Archer Daniels Midland Company, 1001 Brush College Road, Decatur, IL 62521, USA
Food Chem Toxicol 45:1523-36. 2007..Statistical analysis was performed using population dietary survey databases of USDA CSFII 1989-1991, CSFII 1994-1996, CDC NHANES III, and combined NHANES 1999-2002...
- Comparing measures of injury severity for use with large databasesShaun C R Stephenson
Injury Prevention Research Unit, Department of Preventive and Social Medicine, Dunedin School of Medicine, University of Otago, New Zealand
J Trauma 53:326-32. 2002....
- Pathology data integration with eXtensible Markup LanguageJules J Berman
Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, USA
Hum Pathol 36:139-45. 2005..This manuscript gives pathologists a glimpse into how XML allows pathology data to be linked to other types of biomedical data and reduces our dependence on centralized proprietary databases.
- National databases and rheumatology research I: longitudinal databases in ScandinaviaTuulikki Sokka
Division of Rheumatology and Immunology, Department of Medicine, Vanderbilt University, 203 Oxford House, Nashville, TN 37232 4500, USA
Rheum Dis Clin North Am 30:851-67, viii. 2004Nationwide population-based longitudinal databases provide excellent resources for medical research in Scandinavia...
- Diagnosing asthma: the fit between survey and administrative databaseLisa Huzel
Department of Internal Medicine, University of Manitoba, Winnipeg, Manitoba, Canada
Can Respir J 9:407-12. 2002..These procedures are extremely expensive. It would be helpful if, at least for some purposes, they could be replaced by cheaper techniques with adequate validity...
- Development of a food frequency questionnaire module and databases for compounds in cooked and processed meatsRashmi Sinha
Nutrition Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892 7273, USA
Mol Nutr Food Res 49:648-55. 2005..cooked meat module within a food frequency questionnaire (FFQ) in the United States of America and created databases to be used in conjunction with this FFQ to estimate intake of HCAs and benzo[a]pyrene, a marker of PAHs...
- Searching literature databases for health care economic evaluations: how systematic can we afford to be?Franco Sassi
Department of Social Policy and Administration LSE Health and Social Care, London, United Kingdom
Med Care 40:387-94. 2002..So far, reviews of economic evaluations have relied upon noncomprehensive sources and have adopted simplistic search methods, both likely to lead to biased results...
- Existing population-based health databases: useful resources for nursing researchMary Beth Zeni
College of Nursing, Florida State University, Tallahassee, FL 32306, USA
Nurs Outlook 55:20-30. 2007..of health conditions in specific groups and health disparities, can be addressed through population-based health databases. Government-funded, federal databases can provide nurse researchers with a representative sample for various ..
- Cardiovascular morbidity and mortality in children with chronic kidney disease in North America: lessons from the USRDS and NAPRTCS databasesMark M Mitsnefes
Division of Nephrology and Hypertension, Cincinnati Children s Hospital Medical Center, Cincinnati, Ohio 45229 3039, USA
Perit Dial Int 25:S120-2. 2005..This article reviews pediatric data pertaining to CV disease obtained from the two largest renal databases in North America...
- Quality and completeness of SNP databasesDavid E Reich
Program in Medical and Population Genetics, Whitehead Institute MIT Center for Genome Research, One Kendall Square, Cambridge, Massachusetts 02139, USA
Nat Genet 33:457-8. 2003To address the quality and completeness of single-nucleotide polymorphism (SNP) databases, we resequenced 173 kb (spanning 17 loci) in 150 chromosomes of west African and European ancestry...
- Drug prescriptions after acute myocardial infarction: dosage, compliance, and persistenceEwurabena Simpson
Division of Clinical Epidemiology, Montreal General Hospital, Montreal, Quebec, Canada
Am Heart J 145:438-44. 2003..few studies have examined dosage and long-term compliance and persistence patterns for the use of these drugs after AMI...
- Identification of tryptic peptides from large databases using multiplexed tandem mass spectrometry: simulations and experimental resultsChristophe Masselon
Pacific Northwest National Laboratory, PO Box 999, Richland, WA 99352, USA
Proteomics 3:1279-86. 2003..elegans database to which the protein sequence had been appended...
- Population structure of Y chromosome SNP haplogroups in the United States and forensic implications for constructing Y chromosome STR databasesMichael F Hammer
Division of Biotechnology, University of Arizona, Tucson, AZ 85721, USA
Forensic Sci Int 164:45-55. 2006..We infer that both inter-ethnic admixture and population structure in ancestral source populations may contribute to fine scale Y-STR heterogeneity within U.S. ethnic groups...
- Hierarchical docking of databases of multiple ligand conformationsDavid M Lorber
University of California San Francisco, Dept of Pharmaceutical Chemistry, 1700 4 Street, QB3 Building Room 508D, San Francisco, CA 94143 2550, USA
Curr Top Med Chem 5:739-49. 2005..Molecules with even millions of conformations can be docked in a few minutes on a single desktop computer...
- The use of cardiovascular risk factor information in practice databases: making the best of patient dataTom Marshall
Senior lecturer in public health, University of Birmingham, Birmingham, UK
Br J Gen Pract 56:600-5. 2006..However, it is not known to what extent this information is already available to clinicians, or the extent to which it is used...
- A primer and comparative review of major US mortality databasesDiane C Cowper
Veterans Affairs Information Resource Center, Department of Veterans Affairs Health Service Research and Development Service Resource Center at the Edward Hines, Jr, Veterans Affairs Hospital, Hines, IL 60141 5000, USA
Ann Epidemiol 12:462-8. 2002..We reviewed the major mortality databases and mortality ascertainment services available in the United States, including the National Death Index (NDI), ..
- Evaluation of algorithms for protein identification from sequence databases using mass spectrometry dataDaniel C Chamrad
Protagen, Dortmund, Germany
Proteomics 4:619-28. 2004..The development of this high-throughput method made an intensive evaluation based on data acquired in a typical proteome project possible. Previous evaluations of PMF and PFF algorithms were mainly based on simulations...
- Text mining neuroscience journal articles to populate neuroscience databasesChiquito J Crasto
Center for Medical Informatics, Yale University, New Haven, CT, USA
Neuroinformatics 1:215-37. 2003We have developed a program NeuroText to populate the neuroscience databases in SenseLab (http://senselab.med.yale.edu/senselab) by mining the natural language text of neuroscience articles...
- NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediationChiquito J Crasto
Center for Medical Informatics, New Haven, CT 06511, USA
J Am Med Inform Assoc 14:355-60. 2007..This project is a first step in exploring how this general approach might be used, in conjunction with other query mediation approaches, to facilitate the integration of many Internet-accessible resources relevant to the neurosciences...
- Cross sectional survey of multicentre clinical databases in the United KingdomNick Black
Health Services Research Unit, Department of Public Health and Policy, London School of Hygiene and Tropical Medicine, London WC1E 7HT
BMJ 328:1478. 2004To describe the multicentre clinical databases that exist in the United Kingdom, to report on their quality, to explore which organisational and managerial features are associated with high quality, and to make recommendations for ..
- Rheumatoid arthritis databasesTuulikki Sokka
Division of Rheumatology and Immunology, Department of Medicine, Vanderbilt University, 203 Oxford House, Nashville, TN 37232 4500, USA
Rheum Dis Clin North Am 30:769-81, vi. 2004Rheumatoid arthritis (RA) registers and databases serve as data storage for longitudinal observational studies...
- False homozygosities at various loci revealed by discrepancies between commercial kits: implications for genetic databasesMagali Delamoye
Service de Biochimie, Faculté de médecine Paris Ouest, 104 boulevard Raymond Poincaré, 92380 Garches, France
Forensic Sci Int 143:47-52. 2004..It is suggested that databases should include information about the kits used to determine the profiles while ensuring that the primer ..
- Protecting patient privacy by quantifiable control of disclosures in disseminated databasesLucila Ohno-Machado
Decision Systems Group, Division of Health Science and Technology, Brigham and Women s Hospital, Harvard MIT, Boston, MA 02115, USA
Int J Med Inform 73:599-606. 2004..A common practice is to remove sensitive data from databases that are disseminated to the public, but this can make the disseminated database useless for important public ..
- Uniform databases in early arthritis: specific measures to complement classification criteria and indices of clinical changeT Pincus
Vanderbilt University Medical Center, Nashville, Tennessee, USA
Clin Exp Rheumatol 21:S79-88. 2003..While these indices have greatly advanced clinical research, databases for long-term observations, including those in early RA described in this Supplement, differ in 20-50% of ..
- Methodologic issues in the use of workers' compensation databases for the study of work injuries with days away from work. I. Sensitivity of case ascertainmentArthur Oleinick
School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA
Am J Ind Med 45:260-74. 2004..This review summarizes information on the sensitivity of state administrative databases in workers' compensation systems for the ascertainment of days-away-from-work (DAFW) work injuries for use in ..
- Databases of patients with early rheumatoid arthritis in the USAT Sokka
Vanderbilt University Medical Center, Nashville, Tennessee, USA
Clin Exp Rheumatol 21:S146-53. 2003Several databases of patients with early rheumatoid arthritis (RA) have been established in the USA...
- Predictors of failed attendances in a multi-specialty outpatient centre using electronic databasesVernon J Lee
Department of Clinical Epidemiology, Tan Tock Seng Hospital, Singapore
BMC Health Serv Res 5:51. 2005..The objective of this study is to show the factors in an existing electronic database that affect failed appointments and to develop a predictive probability model to increase the effectiveness of interventions...
- Identifying cumulative trauma disorders of the upper extremity in workers' compensation databasesDianne Zakaria
Department of Epidemiology and Biostatistics, University of Western Ontario, London, Ontatio, Canada
Am J Ind Med 43:507-18. 2003Impeding the use of workers' compensation databases for surveillance of cumulative trauma disorder of the upper extremity (CTDUE) is the lack of valid and reliable extraction strategies.
- A novel search engine for virtual screening of very large databasesDavid Vidal
Laboratory of Biomolecular NMR, Barcelona Biomedical Research Institute, Parc Cientific de Barcelona, Josep Samitier, 1 5 08028 Barcelona, Spain
J Chem Inf Model 46:836-43. 2006Virtual screening of large chemical databases using the structure of the receptor can be computationally very demanding...
- The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experienceAshokkumar A Patel
Department of Pathology, Center for Pathology Informatics, Benedum Oncology Informatics Center, University of Pittsburgh, Pittsburgh, PA, USA
BMC Cancer 5:108. 2005..To facilitate this effort, it was critical to arrive at agreed upon common data elements (CDEs) that could be used to collect demographic, pathologic, treatment and clinical outcome data...
- Epidemiology of nonfatal deliberate self-harm in the United States as described in three medical databasesCynthia A Claassen
Mood Disorders Research Program and Clinic, USA
Suicide Life Threat Behav 36:192-212. 2006....
- Body MR imaging and CT volume: variations and trends based on an analysis of medicare and fee-for-service health insurance databasesDonald G Mitchell
Department of Radiology, Thomas Jefferson University, 1096 Main Bldg, 132 S 10th St, Philadelphia, PA 19107, USA
AJR Am J Roentgenol 179:27-31. 2002..We examined Medicare and fee-for-service data sets to understand better the utilization of MR imaging for imaging the pelvis, abdomen, and chest relative to its use in imaging for other body parts and to the utilization of CT...
- Mining genome databases to identify and understand new gene regulatory systemsGary D Stormo
Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63110 8232, USA
Curr Opin Microbiol 5:149-53. 2002..Recent advances in computational methodology for uncovering transcriptional regulatory components and their interactions are discussed...
- Agreement between ethnicity recorded in two New Zealand health databases: effects of discordance on cardiovascular outcome measures (PREDICT CVD3)Roger J Marshall
School of Population Health, University of Auckland, New Zealand
Aust N Z J Public Health 31:211-6. 2007To assess agreement between ethnicity as recorded by two independent databases in New Zealand, PREDICT and the National Health Index (NHI), and to assess sensitivity of ethnic-specific measures of health outcomes to either ethnicity ..
- Surgical procedure logging with use of a hand-held computerSandra Fischer
Mount Sinai Hospital and Interdepartmental Division of Critical Care, University of Toronto, Ont
Can J Surg 45:345-50. 2002..To evaluate the feasibility of incorporating hand-held computing technology in a surgical residency program, by means of hand-held devices for surgical procedure logging linked through the Internet to a central database...
- A Taxonomic Search Engine: federating taxonomic databases using web servicesRoderic D M Page
Division of Environmental and Evolutionary Biology, Institute of Biomedical and Life Sciences, Graham Kerr Building, University of Glasgow, Glasgow G12 8QQ, UK
BMC Bioinformatics 6:48. 2005The taxonomic name of an organism is a key link between different databases that store information on that organism...
- [Sensitivity and accuracy of health databases in determining incidence of lymphoid malignancies in an Italian population]M G Calzari
Dipartimento di Scienze Igienistiche, Microbiologiche e Biostatistiche, Universita di Modena e Reggio Emilia
Ann Ig 18:127-36. 2006We examined the sensitivity and the accuracy of three health databases (hospital discharge data, death certificates and pathologic records) between 1997 and 2001 in an Italian community, to evaluate their accuracy for the diagnosis of ..
- Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databasesMarko Srdanovic
Weill Cornell Medical College, 1300 York Ave, New York, NY 10021, USA
BMC Bioinformatics 6:5. 2005..SigPath is an example of a complex biological database that needs to store various types of information connected by many relationships...
- Fast 3D molecular superposition and similarity search in databases of flexible moleculesAndreas Kramer
IBM Almaden Research Center, 650 Harry Road, San Jose, CA 95120, USA
J Comput Aided Mol Des 17:13-38. 2003We present a new method (fFLASH) for the virtual screening of compound databases that is based on explicit three-dimensional molecular superpositions...
- Measuring use patterns of online journals and databasesSandra L De Groote
Library of the Health Sciences, University of Illinois at Chicago, 1750 West Polk Street, Chicago, Illinois 60612, USA
J Med Libr Assoc 91:231-40. 2003This research sought to determine use of online biomedical journals and databases and to assess current user characteristics associated with the use of online resources in an academic health sciences center.
- [Infant mortality according to race/color in Brazil: what do the national databases say?]Andrey Moreira Cardoso
Centro de Vigilancia Epidemiologica, Secretaria de Estado de Saúde do Rio de Janeiro, Rio de Janeiro, Brazil
Cad Saude Publica 21:1602-8. 2005..0% to 90.0% higher than that of white or brown children. It is hoped that improved recording in the SIM and SINASC databases will allow a more in-depth discussion of health inequalities according to race, color, and ethnicity in Brazil.
- [The role of electronic databases in practical decision making in the care of patients with cerebrovascular diseases]Daniel Bereczki
Debreceni Egyetem Orvos és Egészségtudományi Centrum, Neurológiai Klinika
Orv Hetil 143:1353-9. 2002..This paper summarises the most important electronic databases that can be used in the care of patients with cerebrovascular diseases...
- Databases and tools for browsing genomesEwan Birney
European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom
Annu Rev Genomics Hum Genet 3:293-310. 2002..This article reviews the database systems and tools for analysis that have so far been developed to address this...
- Individual variability in brain activations associated with episodic retrieval: a role for large-scale databasesMichael B Miller
Department of Psychology, University of California, Santa Barbara, CA, USA
Int J Psychophysiol 63:205-13. 2007..We argue that individual analyses in conjunction with group analyses are likely to be critical in fully understanding the relationship between retrieval processes and underlying neural systems...
- A dynamic problem to knowledge linking Semantic Web service based on clinical codesM N Kamel Boulos
Centre for Measurement and Information in Medicine, School of Informatics, City University, Northampton Square, London, EC1V 0HB, UK
Med Inform Internet Med 27:127-37. 2002..The actual success of the system will depend on the quality and granularity of metadata it uses and the topical coverage and quality of resources to which it points...
- Assigning new GO annotations to protein data bank sequences by combining structure and sequence homologyJulia V Ponomarenko
San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093 0537, USA
Proteins 58:855-65. 2005..The effect of superfolds (folds with many functions) is considered and, by comparison to the Structural Classification of Proteins (SCOP), the individual effects of family, superfamily, and fold...
- Identification and characterization of ARHGAP24 and ARHGAP25 genes in silicoMasuko Katoh
M and M Medical BioInformatics, Narashino 275 0022, Japan
Int J Mol Med 14:333-8. 2004..This is the first report on identification and characterization of the ARHGAP24 and ARHGAP25 genes...
- Patterns of gene expression in the developing adult sea urchin central nervous system reveal multiple domains and deep-seated neural pentameryBelinda J Sly
Indiana Molecular Biology Institute and Department of Biology, Indiana University, Bloomington 47405, USA
Evol Dev 4:189-204. 2002..The transcription patterns reflect the morphological pentamery of the echinoderm CNS and provide no indication of an underlying functional bilateral symmetry in the CNS...
- Identification and characterization of Crumbs homolog 2 gene at human chromosome 9q33.3Masuko Katoh
M and M Medical BioInformatics, Narashino 275 0022, Japan
Int J Oncol 24:743-9. 2004..3 and CRB1-MGC27044-LHX9-NEK7 locus at human chromosome 1q31.3 were paralogous regions within the human genome. This is the first report on identification and characterization of the CRB2 gene...
- Identification and characterization of human and mouse ovastacin: a novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fishVictor Quesada
Departamento de Bioquimica y Biologia Molecular and Morfologia y Biologia Celular, Facultad de Medicina, Instituto Universitario de Oncologia, Universidad de Oviedo, 33006 Oviedo, Spain
J Biol Chem 279:26627-34. 2004..On the basis of these results, we suggest that ovastacin could play in mammals a physiological function similar to that performed by hatching proteases in evolutionary distant species from arthropods to fish...
- A real-time and dynamic biological information retrieval and analysis system (BIRAS)Qi Zhou
Department of Genomics and Proteomics, Beijing Institute of Radiation Medicine, Beijing 100850, China
Genomics Proteomics Bioinformatics 1:74-7. 2003..the user-defined information, it is believed that BIRAS would be extensively used to retrieve specific information from large amount of biological databases in now days. The program is available on request from the corresponding author.
- GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environmentsS A Kirov
Graduate School for Genome Science and Technology, Oak Ridge National Laboratory University of Tennessee, Oak Ridge, USA
BMC Bioinformatics 6:72. 2005The analysis of biological data is greatly enhanced by existing or emerging databases. Most existing databases, with few exceptions are not designed to easily support large scale computational analysis, but rather offer exclusively a web ..
- Architecture of the herpes simplex virus major capsid protein derived from structural bioinformaticsMatthew L Baker
National Center for Macromolecular Imaging, Baylor College of Medicine, Houston, TX 77030, USA
J Mol Biol 331:447-56. 2003..The combined structural and sequence-based informatics has led to an architectural model of VP5. This model placed in the context of the capsid provides insights into the strategies used to achieve viral capsid stability...
- A multidomain TIGR/olfactomedin protein family with conserved structural similarity in the N-terminal region and conserved motifs in the C-terminal regionMichelle L Green
Stanford Medical Informatics, Stanford University School of Medicine, Stanford, California 94305 5479, USA
Mol Cell Proteomics 1:394-403. 2002..Additionally, we have identified a group of chitinase sequences containing several of the highly conserved motifs present in the C-terminal region of the olfactomedin domain-containing sequences...
- Disruption of the mthfd1 gene reveals a monofunctional 10-formyltetrahydrofolate synthetase in mammalian mitochondriaKaren E Christensen
Department of Biochemistry, McGill University, Montreal, Quebec H3G 1Y6, Canada
J Biol Chem 280:7597-602. 2005..This monofunctional synthetase completes the pathway for the production of formate from formyltetrahydrofolate in the mitochondria in our model of mammalian one-carbon folate metabolism in embryonic and transformed cells...
- Promoter classifier: software package for promoter database analysisNaum I Gershenzon
Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, USA
Appl Bioinformatics 4:205-9. 2005..The program Promoter Divider is described in more detail as a representative component of the package...
- Service-oriented scienceIan Foster
Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA, and Department of Computer Science, University of Chicago, Chicago, IL 60637, USA
Science 308:814-7. 2005..Grid technologies can accelerate the development and adoption of service-oriented science by enabling a separation of concerns between discipline-specific content and domain-independent software and hardware infrastructure...
- GeneNotes--a novel information management software for biologistsPengyu Hong
BioX program, Department of Statistics and HRP, Stanford University, Stanford, CA 94305 4065, USA
BMC Bioinformatics 6:20. 2005Collecting and managing information is a challenging task in a genome-wide profiling research project. Most databases and online computational tools require a direct human involvement...
- The informatics of a C57BL/6J mouse brain atlasAllan MacKenzie-Graham
Laboratory of Neuro Imaging, Department of Neurology, University of California, Los Angeles, CA, USA
Neuroinformatics 1:397-410. 2003..A comprehensive framework that encompasses many forms of information in the context of anatomic imaging holds tremendous promise for producing new insights. The atlas and associated tools can be found at http://www.loni.ucla.edu/MAP...
- Atlas - a data warehouse for integrative bioinformaticsSohrab P Shah
UBC Bioinformatics Centre, University of British Columbia, Vancouver, BC, Canada
BMC Bioinformatics 6:34. 2005..The goal of the system is to provide data, as well as a software infrastructure for bioinformatics research and development...
- IMGT-Choreography for immunogenetics and immunoinformaticsMarie Paule Lefranc
Universite Montpellier II, Laboratoire d ImmunoGenetique Moleculaire LIGM, UPR CNRS 1142, Institut de Genetique Humaine IGH, 141 rue de la Cardonille, 34396 Montpellier Cedex 5, France
In Silico Biol 5:45-60. 2005..We are developing Web services to automatically query IMGT databases and tools...
- Improving interoperability between microbial information and sequence databasesPaolo Romano
Bioinformatics and Structural Proteomics, National Cancer Research Institute, Largo Rosanna Benzi 10, I 16132, Genova, Italy
BMC Bioinformatics 6:S23. 2005..Identification of links to sequence databases can be useful, but annotation and indexing problems, together with compilation errors, immediately arise...
- Presentation of differentially regulated proteins within a web-accessible proteome database system of microorganismsKlaus Peter Pleissner
Core Facility Bioinformatics, Max Planck Institute for Infection Biology, Berlin, Germany
Proteomics 4:2987-90. 2004Web-accessible proteome databases represent indispensable tools for quantitative and comparative proteomics research...
- YeastHub: a semantic web use case for integrating data in the life sciences domainKei Hoi Cheung
Center for Medical Informatics, Yale University New Haven, CT 06520, USA
Bioinformatics 21:i85-96. 2005....
- Chemistry in bioinformaticsPeter Murray-Rust
Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
BMC Bioinformatics 6:141. 2005..We argue that the technology is already available; we require a collective agreement to enhance publication protocols...
- From XML to RDF: how semantic web technologies will change the design of 'omic' standardsXiaoshu Wang
Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, 135 Cannon St Suite 303, Charleston, South Carolina 29403 5720, USA
Nat Biotechnol 23:1099-103. 2005..In the present article, we discuss why semantic web technologies, as recommended by the World Wide Web consortium (W3C), expand current data standard technology for biological data representation and management...
- Efficient prediction of alternative splice forms using protein domain homologyMichael Hiller
Friedrich Schiller Universitaet Jena, Institute of Computer Science, Chair for Bioinformatics, Ernst Abbe Platz 1 4, D 07743 Jena, Germany
In Silico Biol 4:195-208. 2004..To this end, we have developed an efficient polynomial-time algorithm, called ASFPred (Alternative Splice Form Prediction). This algorithm needs only a set of exons as input...
- Reliability of transmembrane predictions in whole-genome dataLUKAS KALL
Center for Genomics and Bioinformatics, Karolinska Institutet, 17177, Stockholm, Sweden
FEBS Lett 532:415-8. 2002..We have also analyzed which programs are most prone to make mispredictions by measuring the frequency of one-out-of-five disagreeing predictions...
- Reliability measures for membrane protein topology prediction algorithmsKarin Melén
Department of Biochemistry and Biophysics, Stockholm Bioinformatics Center, Stockholm University, SE 106 91 Stockholm, Sweden
J Mol Biol 327:735-44. 2003....
- Global gene expression analysis by combinatorial optimizationAdam Ameur
SICS, Swedish Institute of Computer Science, P O Box 1263, S 164 29 Kista, Sweden
In Silico Biol 4:225-41. 2004..We present two variants of the method. One uses state-of-the-art commercial software for solving problems of this kind, the other a code developed by us specifically for this purpose, released in the public domain under GPL license...
- Comparison of character-level and part of speech features for name recognition in biomedical textsNigel Collier
National Institute of Informatics, 2 1 2 Hitotsubashi, Chiyoda ku, Tokyo 101 8430, Japan
J Biomed Inform 37:423-35. 2004..to aid in fact extraction, document screening, citation analysis, and linkage with large gene and gene-product databases. In particular there has been an intensive investigation into the named entity (NE) task as a core technology in ..
- Enhancing HMM-based biomedical named entity recognition by studying special phenomenaJie Zhang
Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore
J Biomed Inform 37:411-22. 2004..To our best knowledge, our system is the first one that copes with the cascaded phenomena...
- The next step in systems biology: simulating the temporospatial dynamics of molecular networkHao Zhu
Bioinformatics Institute of Singapore, Singapore
Bioessays 26:68-72. 2004..The aim of this paper is to present a brief and informative, but not all-inclusive, viewpoint on the computational aspects of modeling and simulation of a non-static molecular network...
- Tissue distribution and evolution of fructosamine 3-kinase and fructosamine 3-kinase-related proteinJerome Delplanque
Laboratory of Physiological Chemistry, Christian de Duve Institute of Cellular Pathology and Universite catholique de Louvain, Avenue Hippocrate 75, B 1200 Brussels, Belgium
J Biol Chem 279:46606-13. 2004..This finding, together with the high affinity of FN3K-RP for ribulosamines, suggests that this enzyme may serve to repair damage caused by the powerful glycating agent, ribose 5-phosphate...
- Unraveling protein interaction networks with near-optimal efficiencyMichael Lappe
EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Nat Biotechnol 22:98-103. 2004..Using this strategy, we estimate that 90% of the human interactome can be covered by 10,000 pull-down experiments, with 50% of the interactions confirmed by reciprocal pull-down experiments...
- Biomedical named entity recognition using two-phase model based on SVMsKi Joong Lee
Natural Language Processing Laboratory, Department of Computer Science and Engineering, Korea University, 1, 5 Ka, Anam Dong, Seoul 136 701, Republic of Korea
J Biomed Inform 37:436-47. 2004..The F-score (beta=1) for the boundary identification is 74.8 and the F-score for the semantic classification is 66.7...
- Computational analysis of shotgun proteomics dataMichael J MacCoss
Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, K307, Box 357730, Seattle, WA 98195 7730, USA
Curr Opin Chem Biol 9:88-94. 2005..This review discusses current approaches for analyzing proteomics data by mass spectrometry and identifies present computational limitations and bottlenecks...
- Phylogenetic analysis of the formin homology 2 domainHenry N Higgs
Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA
Mol Biol Cell 16:1-13. 2005..This analysis allows for a formin nomenclature system based on sequence relationships, as well as suggesting strategies for the determination of biochemical and cellular activities of these proteins...
- Filtering remote homologues using predicted structural informationKatsunori Uehara
Graduate School of Information Science, Nara Institute of Science and Technology, Ikoma, Nara 630 0192, Japan
Protein Eng Des Sel 17:565-70. 2004..The advantage of our method is its easy implementation with fewer parameters to be tuned and faster computation. We also discuss its performance with predicted and observed secondary structures...
- Structural characterization of NETNES, a novel glycoconjugate in Trypanosoma cruzi epimastigotesJames I Macrae
Division of Biological Chemistry and Molecular Microbiology, University of Dundee, Scotland, United Kingdom
J Biol Chem 280:12201-11. 2005..cruzi genome data base. These genes are predicted to encode 65-amino acid proteins with cleavable 26-amino acid N-terminal signal peptides and 26-amino acid C-terminal GPI addition signal peptides...
- Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancyChandana B Herath
Laboratory of Reproductive Biology and Technology, National Institute of Agrobiological Sciences, Tsukuba City, Ibaraki 305 8602, Japan
Biochem Biophys Res Commun 313:666-80. 2004..Of which, 1442 were known genes while 617 sequences had matches with sequences found in expressed sequence tags databases. In addition, 616 unknown sequences were found and these sequences may possibly be identified as candidates for ..
- Identification and characterization of human FCHO2 and mouse Fcho2 genes in silicoMasuko Katoh
M and M Medical BioInformatics, Narashino 275 0022, Japan
Int J Mol Med 14:327-31. 2004..elegans 2B609 were found consisting of N-terminal FCH domain and C-terminal FOH domain. This is the first report on identification and characterization of evolutionarily conserved FCHO homologs as well as the novel FOH domain...
- Solution structure and DNA binding of the zinc-finger domain from DNA ligase IIIalphaArkadiusz W Kulczyk
MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK
J Mol Biol 341:723-38. 2004..Likely implications for DNA binding are discussed...
- Fbx7 functions in the SCF complex regulating Cdk1-cyclin B-phosphorylated hepatoma up-regulated protein (HURP) proteolysis by a proline-rich regionJung Mao Hsu
Division of Molecular and Genomic Medicine, National Health Research Institutes, Taipei 115, Taiwan
J Biol Chem 279:32592-602. 2004..Taken together, these findings further expound the diverse substrate-recognition abilities of the SCF complexes...
- Home care delivery through the mobile telecommunications platform: the Citizen Health System (CHS) perspectiveN Maglaveras
Lab of Medical Informatics, The Medical School, Aristotelian University, Box 323, 54124, Macedonia, Thessaloniki, Greece
Int J Med Inform 68:99-111. 2002....
- Desktop and mobile software development for surgical practiceLeslie Oyama
Division of Pediatric Surgery, Department of Surgery, Boston University School of Medicine, Boston, MA, USA
J Pediatr Surg 37:477-81. 2002..The aim of this study was to develop a mobile software solution that will merge patient data with a centralized patient database, aid surgical decision making, and document clinical services...
- STATISITICAL DESIGN, MONITORING &COORD. OF VISION CLINICAL TRIALS &EPIDEMIOLOGYKeri Hammel; Fiscal Year: 2012..This will include, but not be limited to, the following areas: analysis of Medicare and other health care databases;evaluation of existing NEI databases such as, centralized NEI Intramural Research database, the Eye Disease Case ..
- STATISITICAL DESIGN, MONITORING &COORD. OF VISION CLINICAL TRIALS &EPIDEMIOLOGYKeri Hammel; Fiscal Year: 2013..This will include, but not be limited to, the following areas: analysis of Medicare and other health care databases;evaluation of existing NEI databases such as, centralized NEI Intramural Research database, the Eye Disease Case ..
- High Throughput Genotyping and DNA Sequencing for Studying the Genetic ContributiSonia Dua; Fiscal Year: 2013..Ensure data accuracy by uploading (as from spreadsheets) or extracting (as from databases) data from existing electronic sources...
- National Network of Libraries of Medicine (NN/LM) Region 2 DENNIS PATTRATH; Fiscal Year: 2010..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
- National Network of Libraries of Medicine (NN/LM) Region 2 Javier Crespo; Fiscal Year: 2010..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
- National Network of Libraries of Medicine - Region 2JM J TOOEY; Fiscal Year: 2013..health professionals aware of available health information resources (including PubMed and other specialized NLM databases)...
- National Network of Libraries of Medicine - Region 2JM J TOOEY; Fiscal Year: 2011
- National Network of Libraries of Medicine - Region 2JM J TOOEY; Fiscal Year: 2012
- National Network of Libraries of Medicine (NN/LM) Region 3Ruth Holst; Fiscal Year: 2010
- Vaccine Development for Falciparum Malaria in Pregnant Women and Their OffspringIan C Michelow; Fiscal Year: 2013..manipulate malaria parasites, perform cell-based infection assays, interrogate the malaria genome/proteome databases, use sophisticated cell imaging technologies, model complex data using advanced statistical methods to account ..
- National Network of Libraries of Medicine (NN/LM) Region 3Ruth Holst; Fiscal Year: 2009
- National Network of Libraries of Medicine - Region 3Ruth Holst; Fiscal Year: 2012
- National Network of Libraries of Medicine - Region 3Ruth Holst; Fiscal Year: 2011
- National Network of Libraries of Medicine - Region 3Ruth Holst; Fiscal Year: 2013
- National Network of Libraries of Medicine (NN/LM) region 4Claire Hamasu; Fiscal Year: 2010
- National Network of Libraries of Medicine (NN/LM) region 4Claire Hamasu; Fiscal Year: 2009
- National Network of Libraries of Medicine (NN/LM) Region 5MICHELLE MALIZIA; Fiscal Year: 2010
- National Network of Libraries of Medicine (NN/LM) Region 6CATHY BURROUGHS; Fiscal Year: 2009
- National Network of Libraries of Medicine (NN/LM) Region 5MICHELLE MALIZIA; Fiscal Year: 2009
- Prospective studies of cancer etiology and prevention in Shanghai and SingaporeJian Min Yuan; Fiscal Year: 2013..These databases have been serving unique resources for a large number of projects for research on cancer etiology and prevention...
- National Network of Libraries of Medicine (NN/LM) Region 7TAMARA COMBS; Fiscal Year: 2010
- National Network of Libraries of Medicine - Region 4HAMASU CLAIRE; Fiscal Year: 2013
- National Network of Libraries of Medicine - Region 8Javier Crespo; Fiscal Year: 2013
- National Network of Libraries of Medicine - Region 4HAMASU CLAIRE; Fiscal Year: 2012
- Genetics and Haloperidol ResponseRobert J Hitzemann; Fiscal Year: 2012..The SNP data will also be used to mask striatal gene expression databases to determine which genes (actually transcripts) within the QTL intervals show strong cis-regulation and strain ..
- National Network of Libraries of Medicine - Region 8Javier Crespo; Fiscal Year: 2012
- National Network of Libraries of Medicine - Region 8Javier Crespo; Fiscal Year: 2011
- National Network of Libraries of Medicine - Region 4HAMASU CLAIRE; Fiscal Year: 2011
- National Network of Libraries of Medicine (NN/LM) Region 1Colleen Cuddy; Fiscal Year: 2010
- National Network of Libraries of Medicine - Region 6CATHY BURROUGHS; Fiscal Year: 2012
- National Network of Libraries of Medicine - Region 6CATHY BURROUGHS; Fiscal Year: 2013
- National Network of Libraries of Medicine (NN/LM) Region 1KATE BURR OLIVER; Fiscal Year: 2009
- National Network of Libraries of Medicine - Region 6CATHY BURROUGHS; Fiscal Year: 2011
- National Network of Libraries of Medicine - Region 5MICHELLE MALIZIA; Fiscal Year: 2013
- National Network of Libraries of Medicine - Region 5MICHELLE MALIZIA; Fiscal Year: 2011
- National Network of Libraries of Medicine - Region 5MICHELLE MALIZIA; Fiscal Year: 2012
- Community Participation Research of Breastfeeding Disparities in African AmericanTamar Ringel Kulka; Fiscal Year: 2009..Data collection will include the use of secondary/existing databases for general demographics and breastfeeding patterns in Durham County as well as primary data collected via focus ..
- THE ETHICS OF POST-CONFLICT AND POST-DISASTER DNA IDENTIFICATIONSarah Wagner; Fiscal Year: 2013..trust, data ownership, informed consent, and illicit use associated with the creation of large genetic databases in countries emerging from conflict or disaster...
- National Network of Libraries of Medicine - Region 7Julie Kwan; Fiscal Year: 2011
- National Network of Libraries of Medicine - Region 7Julie Kwan; Fiscal Year: 2012
- National Network of Libraries of Medicine - Region 7Julie Kwan; Fiscal Year: 2013
- National Network of Libraries of Medicine - Region 1BARBARA EPSTEIN; Fiscal Year: 2012
- National Network of Libraries of Medicine - Region 1BARBARA EPSTEIN; Fiscal Year: 2013
- National Network of Libraries of Medicine - Region 1BARBARA EPSTEIN; Fiscal Year: 2011
- Exome re-sequencing candidate loci for familial essential tremorBarry E Kosofsky; Fiscal Year: 2012..Advances in genome bioinformatics and the availability of validated normative population databases (e.g...
- C. Difficile Outcomes and Effectiveness of Treatment Strategies in SCICharlesnika T Evans; Fiscal Year: 2013..This is an important project with a strong study team. 2. Discussion of how multiple events from the same patient will be handled is needed. 3. How guarding against chance findings and selection of the validation cases is needed. ..
- Aryl Hydrocarbon Receptor Modulators for the Treatment of Hepatocellular CarcinomSiva Kumar Kolluri; Fiscal Year: 2012..These homology models of the AhR will be used to screen both synthetic and natural compound databases by VLS to identify potential binders of the AhR...
- RADIATION-INDUCED THYROID CANCERHeinz Ulrich G Weier; Fiscal Year: 2011..rearrangements, we will identify genes that map at or near the chromosomal breakpoints using publicly available databases and bioinformatics tools...
- Improving Patient Safety: Context and Nurses'Work Processes for Pressure UlcersLynn M Soban; Fiscal Year: 2013..VANOD was not created for research, but many VA databases created for clinical purposes are used in studies especially when other data are not available. 2...
- Graves'Disease Therapy Risks to Mother and FetusScott A Rivkees; Fiscal Year: 2013..Cohort studies will be performed using large clinical databases, including those of Marketscan (>1...
- Biosynthesis of Microbial IsoprenoidsDavid E Cane; Fiscal Year: 2013..mechanistic and structural characterization of three broad classes of proteins uncovered by mining of genomic databases and functional gene expression that present novel structural, mechanistic, or biological features: 1) ..
- Design of a Multicenter Clinical Trial of Allopurinol to Prevent GFR Loss in T1DS MICHAEL MAUER; Fiscal Year: 2011..To finalize the Study Protocol;2.To identify the best site specific mechanisms to query the respective patient databases for the quickest identification of eligible subjects;3.To prepare a Manual of Operation;4...
- Dopamine Transporter Structure and FunctionChristopher K Surratt; Fiscal Year: 2010..dopamine transporter (DAT) interacts with its CNS-active inhibitors;such maps will be used to screen structural databases for novel compounds that function at the DAT...
- Innate Immunity, Biomarkers and Myocardial InfarctionGregory L Stahl; Fiscal Year: 2010..to quantify the complement components within the MBL pathway so we can screen human sera repositories and databases to evaluate the role of MBL in human disease...
- Core Center for BioBehavioral Sciences of Communication DisordersMabel L Rice; Fiscal Year: 2013..Specifically, PARC has designed a number of databases geared towards targeting households for recruitment and keeping track of individuals'participation in ..
- Defining the functions of uncharacterized genes in priority pathogensSean Crosson; Fiscal Year: 2013..provided by applicant): Understanding the functions of the thousands of uncharacterized genes in sequence databases is among the most significant challenges in biology...
- Mutational Cloning in Familial Dementia and Alzheimers DiseaseWendy H Raskind; Fiscal Year: 2010..will deposit FD genotype and phenotype information into the on-line resources GeneTests and the NCBI Variation Databases (dbSNP and dbGaP)...
- Characterizing Mitochondrial DNA Susceptibility to Breast, Colorectal, and ProstaIona Cheng; Fiscal Year: 2012..will abstract sequencing data for African Americans, Japanese Americans, Latinos, and Whites from public mtDNA databases, in parallel with sequencing Native Hawaiians (225 controls), a group that is not represented in public ..
- Chicago Community-Acquired Pneumonia ConsortiumRichard G Wunderink; Fiscal Year: 2010..We will use an innovative geographic analysis based on zip code and public databases to determine the population-based incidence...
- Host Genetic Epidemiology in HIV-1-Discordant African Couples and Other CohortsJianming Tang; Fiscal Year: 2012..Related new candidate genes will be considered. Public bioinformatics databases, genome-level sequencing services, and state-of-the-art laboratory techniques will be used to detect ..
- REACTIVE OXYGEN SPECIES AND AGINGElias K Michaelis; Fiscal Year: 2012..Core A, B and C were all expanded to include enhanced data sharing, relational databases, and bioinformatics analytical tools for systematic integration of the information from the Projects...
- STATINS AND ACE INHIBITORS IN ADULTS WITH DIABETES AND COMORBID CONDITIONSDavid E Grembowski; Fiscal Year: 2010....
- USING CLAIMS DATA FOR CANCER SURVEILLANCELynne Penberthy; Fiscal Year: 2000..These databases, however, have the limitations of minimal clinical content and association with billing activities...
- Multi-source clinical Question Answering systemGuergana Savova; Fiscal Year: 2010..query that will result in a search that appears to "understand" the question, a search that inspects multiple databases and brings findings together into a useful answer...
- A Bridge Between the Academic and Clinical Setting: Evi*Rebecca Craik; Fiscal Year: 2003..Obstacles preventing health care providers from using databases such as PubMed or Medline to answer clinical questions include: lack of access to Internet, lack of skills to ..
- Digital Liberary Access-Rural Taylor County, KentuckyMICHELE DICKENS; Fiscal Year: 2004..Aim 2: To provide online access to free databases and electronic resources such as NLM's MEDLINE and to subscription databases such as OVID, MDConsult, the ..
- HERMES - Help physicians to Extract and aRticulate Multimedia information from liHong Yu; Fiscal Year: 2009..Many medical databases (e.g...
- Towards the Building of a Comprehensive Searchable Biological Experiment DatabaseHong Yu; Fiscal Year: 2009..2001;Rzhetsky et al. 2004), iHOP (Hoffmann and Valencia 2005), and BioMedQA (Lee et al. 2006a), and annotated databases (e.g., SWISSPROT, OMIM (Hamosh et al. 2005) and BIND (Alfarano et al. 2005))...
- Vector Surveillance Ontology and Vector Management OntologySaul Lozano Fuentes; Fiscal Year: 2010..will provide standardization of terminology, inform database schemas, facilitate linkage of data from fragmented databases (e.g...
- Non-Intrusive Automated Portable Data Collection System for Aging SurveysCindy Crump; Fiscal Year: 2009..dramatically improves the value of household surveys by adding a rich dataset of information to longitudinal databases that is not collected today...
- Identifying Low-Risk Patients with Pulmonary EmbolismDrahomir Aujesky; Fiscal Year: 2005..This is a retrospective cohort study using 3 large and reliable databases, the PHC4 database, the MediQual Atlas database, and the National Death Index (NDI)...
- Oral Health Disparities Among Medicaid BeneficiariesSujha Subramanian; Fiscal Year: 2010..identify comparison groups, including those insured by private payers and Medicare) linked with cancer registry databases to address three specific objectives: (1) assess the ability to study the special needs population and ..
- Specialized Centers for Cell-Based Therapy for NHLBI an*Shelly Carter; Fiscal Year: 2009..characteristics and preclinical and clinical outcome data;assess availability and potential use of existing databases including development of common data elements;provide a web-based catalog of cellular products for potential use ..
- Statistical Innovations in Health Services ResearchJoseph Gardiner; Fiscal Year: 2009DESCRIPTION (Provided by Applicant): Studies of healthcare utilization from national and state administrative databases have been stymied by a lack of powerful methodological approaches to circumvent deficiency of specificity often ..
- dbVision: A Toolbox for bioimage databasesKaushal Solanki; Fiscal Year: 2009..together with the lack of a central and searchable repository for images of all sorts (analogous to DNA sequence databases) is a major impediment to progress in essentially all fields under the general description of molecular and ..
- Evaluating Effectiveness of a Statewide Public Mental Health Re-entry ProgramStephanie Hartwell; Fiscal Year: 2010..Abstract The purpose of this study is to combine existing administrative databases to evaluate the effectiveness of a statewide re-entry program for people with mental illness exiting corrections...
- CLINICAL SEARCH RETRIEVAL FROM FOUR ELECTRONIC DATABASESR Haynes; Fiscal Year: 2007..relevant and scientifically sound reports from large, general purpose, biomedical research bibliographic databases such as MEDLINE...
- LONGITUDINAL STUDY OF NEIGHBORHOOD PREDICTORS OF CVDJan Sundquist; Fiscal Year: 2005Background: There are few comprehensive databases that allow for a longitudinal examination of how neighborhood-level factors may interact with individual characteristics to predict incident cases of cardiovascular disease (CVD) and all-..
- DATA MINING AND MODEL BUILDING IN MEDICAL INFORMATICSBruce Buchanan; Fiscal Year: 2001..goal is to assist biomedical scientists by extracting and codifying new knowledge from large biomedical databases routinely by computer...
- PathMiner: Web Telemicroscopy & Intelligent DatabasesDAVID FORAN; Fiscal Year: 2004..The IA subsystem performs multivariate indexing and remote management of databases. The IGDS subsystem supports submission of queries across networks in order to automatically locate and retrieve ..