soybean

Summary

Alias: soybeans, Glycine max, Glycine max (L.) Merr., Glycine max; cv. Wye

Top Publications

  1. Moran Lauter A, Peiffer G, Yin T, Whitham S, Cook D, Shoemaker R, et al. Identification of candidate genes involved in early iron deficiency chlorosis signaling in soybean (Glycine max) roots and leaves. BMC Genomics. 2014;15:702 pubmed publisher
    ..Soybeans (Glycine max (L.) Merr.) grown in high pH soils often suffer from IDC, resulting in substantial yield losses...
  2. Mariani M, Villarreal M, Cheung F, Leiva E, Madoery R, Fidelio G. In silico and in vitro characterization of phospholipase Aâ‚‚ isoforms from soybean (Glycine max). Biochimie. 2012;94:2608-19 pubmed
    At the present, no secreted phospholipase Aâ‚‚ (sPLAâ‚‚) from soybean (Glycine max) was investigated in detail. In this work we identified five sequences of putative secreted sPLAâ‚‚ from soybean after a BLAST search in G...
  3. Liu G, Xu H, Zhang L, Zheng Y. Fe binding properties of two soybean (Glycine max L.) LEA4 proteins associated with antioxidant activity. Plant Cell Physiol. 2011;52:994-1002 pubmed publisher
    ..In this study, the metal binding properties of two related soybean LEA4 proteins, GmPM1 and GmPM9, were tested using immobilized metal ion affinity chromatography (IMAC)...
  4. Miyahara A, Hirani T, Oakes M, Kereszt A, Kobe B, Djordjevic M, et al. Soybean nodule autoregulation receptor kinase phosphorylates two kinase-associated protein phosphatases in vitro. J Biol Chem. 2008;283:25381-91 pubmed publisher
    ..Autophosphorylated NARK kinase domain was, in turn, dephosphorylated by both KAPP1 and KAPP2. Our results suggest a model for signal transduction involving NARK in the control of nodule development...
  5. Oven M, Page J, Zenk M, Kutchan T. Molecular characterization of the homo-phytochelatin synthase of soybean Glycine max: relation to phytochelatin synthase. J Biol Chem. 2002;277:4747-54 pubmed publisher
    ..compounds, we have isolated and functionally expressed a cDNA GmhPCS1 encoding homo-phytochelatin synthase from Glycine max, a plant known to accumulate homo-phytochelatins rather than phytochelatins upon the exposure to heavy metals...
  6. Fan C, Wang X, Hu R, Wang Y, Xiao C, Jiang Y, et al. The pattern of Phosphate transporter 1 genes evolutionary divergence in Glycine max L. BMC Plant Biol. 2013;13:48 pubmed publisher
    ..All potential Phosphate transporter 1 genes in Glycine max L. (GmPHT1) were systematically analyzed using both bioinformatics and experimentation...
  7. Chi Y, Huang F, Liu H, Yang S, Yu D. An APETALA1-like gene of soybean regulates flowering time and specifies floral organs. J Plant Physiol. 2011;168:2251-9 pubmed publisher
    ..In this research, we isolated and characterized GmAP1, which encoded an AP1-like protein in soybean. GmAP1 contained eight exons and seven introns and was specifically expressed in the flower, especially in the ..
  8. Werner A, Sparkes I, Romeis T, Witte C. Identification, biochemical characterization, and subcellular localization of allantoate amidohydrolases from Arabidopsis and soybean. Plant Physiol. 2008;146:418-30 pubmed
    ..AAHs from Arabidopsis (Arabidopsis thaliana; AtAAH) and from soybean (Glycine max; GmAAH) were cloned, expressed in planta as StrepII-tagged variants, and highly purified from leaf extracts...
  9. Thakare D, Kumudini S, Dinkins R. Expression of flowering-time genes in soybean E1 near-isogenic lines under short and long day conditions. Planta. 2010;231:951-63 pubmed publisher
    Control of soybean flowering time is important for geographic adaptation and maximizing yield...

More Information

Publications162 found, 100 shown here

  1. Goldraij A, Beamer L, Polacco J. Interallelic complementation at the ubiquitous urease coding locus of soybean. Plant Physiol. 2003;132:1801-10 pubmed
    Soybean (Glycine max [L.] Merrill) mutant aj6 carries a single recessive lesion, aj6, that eliminates ubiquitous urease activity in leaves and callus while retaining normal embryo-specific urease activity...
  2. Arahira M, Nong V, Udaka K, Fukazawa C. Purification, molecular cloning and ethylene-inducible expression of a soluble-type epoxide hydrolase from soybean (Glycine max [L.] Merr.). Eur J Biochem. 2000;267:2649-57 pubmed
    A soybean protein was purified from mature dry seeds...
  3. Porcel R, Aroca R, Azc n R, Ruiz Lozano J. PIP aquaporin gene expression in arbuscular mycorrhizal Glycine max and Lactuca sativa plants in relation to drought stress tolerance. Plant Mol Biol. 2006;60:389-404 pubmed publisher
    ..In this study, genes encoding plasma membrane aquaporins (PIPs) from soybean and lettuce were cloned and their expression pattern studied in AM and nonAM plants cultivated under well-watered ..
  4. Qin L, Guo Y, Chen L, Liang R, Gu M, Xu G, et al. Functional characterization of 14 Pht1 family genes in yeast and their expressions in response to nutrient starvation in soybean. PLoS ONE. 2012;7:e47726 pubmed publisher
    ..Although Pht1 family genes have been well studied in model plants, little is known about their functions in soybean, an important legume crop worldwide.
  5. Djordjevic M, Oakes M, Wong C, Singh M, Bhalla P, Kusumawati L, et al. Border sequences of Medicago truncatula CLE36 are specifically cleaved by endoproteases common to the extracellular fluids of Medicago and soybean. J Exp Bot. 2011;62:4649-59 pubmed publisher
    ..Using mass spectrometry, Glycine max and Medicago extracellular fluids were each shown to possess an endoproteolytic activity that recognizes and ..
  6. Faria J, Reis P, Reis M, Rosado G, Pinheiro G, Mendes G, et al. The NAC domain-containing protein, GmNAC6, is a downstream component of the ER stress- and osmotic stress-induced NRP-mediated cell-death signaling pathway. BMC Plant Biol. 2011;11:129 pubmed publisher
    ..In the present investigation, we discovered an NAC domain-containing protein from soybean, GmNAC6 (Glycine max NAC6), to be a downstream component of the integrated pathway...
  7. Hsing Y, Tsou C, Hsu T, Chen Z, Hsieh K, Hsieh J, et al. Tissue- and stage-specific expression of a soybean (Glycine max L.) seed-maturation, biotinylated protein. Plant Mol Biol. 1998;38:481-90 pubmed
    A cDNA clone GmPM4 which encodes mRNA species in mature or dry soybean seeds was characterized. DNA sequence analysis shows that the deduced polypeptides have a molecular mass of 68 kDa...
  8. Axarli I, Georgiadou C, Dhavala P, Papageorgiou A, Labrou N. Investigation of the role of conserved residues Ser13, Asn48 and Pro49 in the catalytic mechanism of the tau class glutathione transferase from Glycine max. Biochim Biophys Acta. 2010;1804:662-7 pubmed publisher
    ..In this report, the catalytic mechanism of the tau class GSTU4-4 isoenzyme from Glycine max (GmGSTU4-4) was investigated by site-directed mutagenesis and steady-state kinetic analysis...
  9. Odani S, Koide T, Ono T. Amino acid sequence of a soybean (Glycine max) seed polypeptide having a poly(L-aspartic acid) structure. J Biol Chem. 1987;262:10502-5 pubmed
    A polypeptide of Mr 4400 was isolated from soybean (Glycine max) seeds by extraction with 60% ethanol followed by ion-exchange and reverse-phase chromatography...
  10. Chronis D, Krishnan H. Sulfur assimilation in soybean ( Glycine max [L.] Merr.): molecular cloning and characterization of a cytosolic isoform of serine acetyltransferase. Planta. 2004;218:417-26 pubmed publisher
    ..3.1.30) was isolated by screening a soybean seedling cDNA library with a (32)P-labeled expressed sequence tag...
  11. Shibuya M, Nishimura K, Yasuyama N, Ebizuka Y. Identification and characterization of glycosyltransferases involved in the biosynthesis of soyasaponin I in Glycine max. FEBS Lett. 2010;584:2258-64 pubmed publisher
    ..Two glycosyltransferases from Glycine max, designated as GmSGT2 and GmSGT3, were identified and characterized...
  12. Shih M, Hsieh T, Jian W, Wu M, Yang S, Hoekstra F, et al. Functional studies of soybean (Glycine max L.) seed LEA proteins GmPM6, GmPM11, and GmPM30 by CD and FTIR spectroscopy. Plant Sci. 2012;196:152-9 pubmed publisher
    ..Here, we characterized three soybean hydrophilic LEA proteins--GmPM11 (LEA I), GmPM6 (LEA II), and GmPM30 (LEA III)--by circular dichroism and Fourier ..
  13. Nagamatsu A, Masuta C, Senda M, Matsuura H, Kasai A, Hong J, et al. Functional analysis of soybean genes involved in flavonoid biosynthesis by virus-induced gene silencing. Plant Biotechnol J. 2007;5:778-90 pubmed
    ..mosaic virus (CMV), was tested for its ability to silence endogenous genes involved in flavonoid biosynthesis in soybean. Symptomless infection was established using a pseudorecombinant virus, which enabled detection of specific ..
  14. Song Q, Liu Y, Hu X, Zhang W, Ma B, Chen S, et al. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol. 2011;11:5 pubmed publisher
    ..studied in model plants such as Arabidopsis and rice; however, the number of identified miRNAs in soybean (Glycine max) is limited, and global identification of the related miRNA targets has not been reported in previous research...
  15. Whelan J, Millar A, Day D. The alternative oxidase is encoded in a multigene family in soybean. Planta. 1996;198:197-201 pubmed
    The copy number of the alternative oxidase gene, Aox, was investigated in soybean (Glycine max L.) using a Polymerase chain reaction (PCR) approach to amplify fragments from soybean genomic DNA...
  16. Watanabe S, Hideshima R, Xia Z, Tsubokura Y, Sato S, Nakamoto Y, et al. Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics. 2009;182:1251-62 pubmed publisher
    ..In soybean [Glycine max (L...
  17. Indrasumunar A, Kereszt A, Searle I, Miyagi M, Li D, Nguyen C, et al. Inactivation of duplicated nod factor receptor 5 (NFR5) genes in recessive loss-of-function non-nodulation mutants of allotetraploid soybean (Glycine max L. Merr.). Plant Cell Physiol. 2010;51:201-14 pubmed publisher
    Chemically induced non-nodulating nod139 and nn5 mutants of soybean (Glycine max) show no visible symptoms in response to rhizobial inoculation. Both exhibit recessive Mendelian inheritance suggesting loss of function...
  18. Li W, Wong F, Tsai S, Phang T, Shao G, Lam H. Tonoplast-located GmCLC1 and GmNHX1 from soybean enhance NaCl tolerance in transgenic bright yellow (BY)-2 cells. Plant Cell Environ. 2006;29:1122-37 pubmed
    Genes encoding ion transporters that regulate ion homeostasis in soybean have not been carefully investigated...
  19. Kong F, Liu B, Xia Z, Sato S, Kim B, Watanabe S, et al. Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean. Plant Physiol. 2010;154:1220-31 pubmed publisher
    ..which were arranged as five pairs of linked genes in different homoeologous chromosomal regions, in soybean (Glycine max), a paleopolyploid species...
  20. Mortier V, Fenta B, Martens C, Rombauts S, Holsters M, Kunert K, et al. Search for nodulation-related CLE genes in the genome of Glycine max. J Exp Bot. 2011;62:2571-83 pubmed publisher
    ..A genome-wide survey of CLE peptide genes in the soybean glycine max genome resulted in the identification of 39 GmCLE genes, the majority of which have not yet been annotated...
  21. Kasai A, Kasai K, Yumoto S, Senda M. Structural features of GmIRCHS, candidate of the I gene inhibiting seed coat pigmentation in soybean: implications for inducing endogenous RNA silencing of chalcone synthase genes. Plant Mol Biol. 2007;64:467-79 pubmed
    Most commercial soybean varieties have yellow seeds due to loss of pigmentation in the seed coat. The I gene inhibits pigmentation over the entire seed coat, resulting in a uniform yellow color of mature harvested seeds...
  22. Zhang M, Li K, Zhang C, Gai J, Yu D. Identification and characterization of class 1 DXS gene encoding 1-deoxy-D-xylulose-5-phosphate synthase, the first committed enzyme of the MEP pathway from soybean. Mol Biol Rep. 2009;36:879-87 pubmed publisher
    ..In this work, a DXS1-like cDNA (GmDXS1) was isolated from soybean. The full-length cDNA of GmDXS1 encoded 708 amino acid residues with a predicted molecular mass of 76.4 KD...
  23. Liu B, Kanazawa A, Matsumura H, Takahashi R, Harada K, Abe J. Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene. Genetics. 2008;180:995-1007 pubmed publisher
    Gene and genome duplications underlie the origins of evolutionary novelty in plants. Soybean, Glycine max, is considered to be a paleopolyploid species with a complex genome...
  24. McCabe -, Finnegan -, Harvey Millar A -, Day -, Whelan -. Differential expression of alternative oxidase genes in soybean cotyledons during postgerminative development. Plant Physiol. 1998;118:675-82 pubmed
    The expression of the alternative oxidase (AOX) was investigated during cotyledon development in soybean (Glycine max [L.] Merr.) seedlings...
  25. Kamauchi S, Wadahama H, Iwasaki K, Nakamoto Y, Nishizawa K, Ishimoto M, et al. Molecular cloning and characterization of two soybean protein disulfide isomerases as molecular chaperones for seed storage proteins. FEBS J. 2008;275:2644-58 pubmed publisher
    ..In this study, we cloned two similar protein disulfide isomerase family genes from soybean leaf (Glycine max L. Merrill. cv Jack)...
  26. Axarli I, Dhavala P, Papageorgiou A, Labrou N. Crystal structure of Glycine max glutathione transferase in complex with glutathione: investigation of the mechanism operating by the Tau class glutathione transferases. Biochem J. 2009;422:247-56 pubmed publisher
    ..The three-dimensional structure of GmGSTU4-4 (Glycine max GST Tau 4-4) complexed with GSH was determined by the molecular replacement method at 2.7 A (1 A=0...
  27. Zhang G, Chen M, Li L, Xu Z, Chen X, Guo J, et al. Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco. J Exp Bot. 2009;60:3781-96 pubmed publisher
    A new member of the AP2/ERF transcription factor family, GmERF3, was isolated from soybean. Sequence analysis showed that GmERF3 contained an AP2/ERF domain of 58 amino acids and two putative nuclear localization signal (NLS) domains...
  28. Neelakandan A, Nguyen H, Kumar R, Tran L, Guttikonda S, Quach T, et al. Molecular characterization and functional analysis of Glycine max sterol methyl transferase 2 genes involved in plant membrane sterol biosynthesis. Plant Mol Biol. 2010;74:503-18 pubmed publisher
    ..The SMT2 genes of soybean (SMT2-1 and SMT2-2) previously cloned and characterized (Neelakandan et al...
  29. Mahalingam R, Wang G, Knap H. Polygalacturonase and polygalacturonase inhibitor protein: gene isolation and transcription in Glycine max-Heterodera glycines interactions. Mol Plant Microbe Interact. 1999;12:490-8 pubmed publisher
    ..A 350-bp fragment with high homology to PGs was identified by differential display (DD) analysis of soybean cyst nematode (SCN) race 3 resistant PI 437654 and susceptible cultivar Essex...
  30. Wu C, Ma Q, Yam K, Cheung M, Xu Y, Han T, et al. In situ expression of the GmNMH7 gene is photoperiod-dependent in a unique soybean (Glycine max [L.] Merr.) flowering reversion system. Planta. 2006;223:725-35 pubmed
    b>Soybean is a short-day plant and its flowering process can be reversed when switching from short-day to long-day conditions...
  31. Tucker M, Burke A, Murphy C, Thai V, Ehrenfried M. Gene expression profiles for cell wall-modifying proteins associated with soybean cyst nematode infection, petiole abscission, root tips, flowers, apical buds, and leaves. J Exp Bot. 2007;58:3395-406 pubmed
    Changes in transcript accumulation for cell wall-modifying proteins were examined in excised soybean root pieces colonized by soybean cyst nematodes (SCN), Heterodera glycines, using RT-PCR and soybean Affymetrix GeneChips...
  32. Lim C, Lee Y, Hwang C. Soybean nodule-enhanced CLE peptides in roots act as signals in GmNARK-mediated nodulation suppression. Plant Cell Physiol. 2011;52:1613-27 pubmed publisher
    ..GmRIC1 and GmRIC2 gene expression were much higher in the supernodulation mutant, SS2-2, than in wild-type (WT) soybeans during nodule development, even after initiation of nitrogen fixation...
  33. Radwan O, Wu X, Govindarajulu M, Libault M, Neece D, Oh M, et al. 14-3-3 proteins SGF14c and SGF14l play critical roles during soybean nodulation. Plant Physiol. 2012;160:2125-36 pubmed publisher
    The soybean (Glycine max) genome contains 18 members of the 14-3-3 protein family, but little is known about their association with specific phenotypes...
  34. Yeboah N, Arahira M, Nong V, Zhang D, Kadokura K, Watanabe A, et al. A class III acidic endochitinase is specifically expressed in the developing seeds of soybean (Glycine max [L.] Merr.). Plant Mol Biol. 1998;36:407-15 pubmed
    A soybean chitinase which has an apparent molecular mass of 28 kDa by SDS-PAGE, and has chitinase specific activity of 133 units per mg protein at pH 5.2 and an apparent pI of 5.7, was purified from mature dry seeds...
  35. Li X, Tian A, Luo G, Gong Z, Zhang J, Chen S. Soybean DRE-binding transcription factors that are responsive to abiotic stresses. Theor Appl Genet. 2005;110:1355-62 pubmed
    Three DREB homologue genes, GmDREBa, GmDREBb, and GmDREBc, were isolated from soybean, Glycine max (L.) Merr. Each of the deduced proteins contains an AP2 domain of 64 amino acids...
  36. Gao H, Narayanan N, Ellison L, Bhattacharyya M. Two classes of highly similar coiled coil-nucleotide binding-leucine rich repeat genes isolated from the Rps1-k locus encode Phytophthora resistance in soybean. Mol Plant Microbe Interact. 2005;18:1035-45 pubmed
    A series of single genes protect soybean from the root and stem disease caused by the oomycete pathogen Phytophthora sojae...
  37. Jian B, Liu B, Bi Y, Hou W, Wu C, Han T. Validation of internal control for gene expression study in soybean by quantitative real-time PCR. BMC Mol Biol. 2008;9:59 pubmed publisher
    ..Only a few studies on HKGs have been done in plants, and none in soybean, an economically important crop...
  38. Wang Y, Li P, Cao X, Wang X, Zhang A, Li X. Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules. Biochem Biophys Res Commun. 2009;378:799-803 pubmed publisher
    ..Symbiotic nitrogen fixation (SNF) is agronomically important for reducing the need of nitrogen fertilizers. The soybean root nodule is the place where SNF takes place...
  39. Chen M, Wang Q, Cheng X, Xu Z, Li L, Ye X, et al. GmDREB2, a soybean DRE-binding transcription factor, conferred drought and high-salt tolerance in transgenic plants. Biochem Biophys Res Commun. 2007;353:299-305 pubmed
    A novel DREB (dehydration responsive element binding protein) homologous gene, GmDREB2, was isolated from soybean. Based on its similarity with AP2 domains, GmDREB2 was classified into A-5 subgroup in DREB subfamily in AP2/EREBP family...
  40. Dong X, Sun Q, Wei D, Li J, Li J, Tang B, et al. A novel ferritin gene, SferH-5, reveals heterogeneity of the 26.5-kDa subunit of soybean (Glycine max) seed ferritin. FEBS Lett. 2007;581:5796-802 pubmed publisher
    A novel ferritin cDNA, SferH-5, has been cloned from 7-day-old soybean seedlings. Putative SferH-5 has 96% identity with SferH-1 reported previously...
  41. Flores T, Karpova O, Su X, Zeng P, Bilyeu K, Sleper D, et al. Silencing of GmFAD3 gene by siRNA leads to low alpha-linolenic acids (18:3) of fad3-mutant phenotype in soybean [Glycine max (Merr.)]. Transgenic Res. 2008;17:839-50 pubmed publisher
    ..gene silencing of the omega-3 fatty acid desaturase (FAD3) gene family in a complex genome, the soybean (Glycine max)...
  42. Chen M, Xu Z, Xia L, Li L, Cheng X, Dong J, et al. Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.). J Exp Bot. 2009;60:121-35 pubmed publisher
    ..A DREB orthologue, GmDREB3, belonging to the A-5 subgroup of the DREB subfamily, was isolated from soybean using the RACE (rapid amplification of cDNA ends) method...
  43. Zhang Q, Li H, Li R, Hu R, Fan C, Chen F, et al. Association of the circadian rhythmic expression of GmCRY1a with a latitudinal cline in photoperiodic flowering of soybean. Proc Natl Acad Sci U S A. 2008;105:21028-33 pubmed publisher
    ..Both cultivated soybean (Glycine max) and its wild relative (G. soja) exhibit a strong latitudinal cline in photoperiodic flowering...
  44. Zheng Y, Huang Y, Xian W, Wang J, Liao H. Identification and expression analysis of the Glycine max CYP707A gene family in response to drought and salt stresses. Ann Bot. 2012;110:743-56 pubmed publisher
    ..The aims of the present study were to identify and functionally analyse the soybean CYP707A gene family, and to explore their expression patterns under dehydration and salt stresses. ..
  45. Gijzen M, Kuflu K, Moy P. Gene amplification of the Hps locus in Glycine max. BMC Plant Biol. 2006;6:6 pubmed publisher
    ..co-segregated with seed lustre phenotype and HPS surface protein in a cross between dull- and shiny-seeded soybeans. In soybean cultivar Harosoy 63, a minimum of 27 +/- 5 copies of the Hps gene were estimated to be present in ..
  46. Schlueter J, Scheffler B, Schlueter S, Shoemaker R. Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.). Genetics. 2006;174:1017-28 pubmed
    The paleopolyploid soybean genome was investigated by sequencing homeologous BAC clones anchored by duplicate N-hydroxycinnamoyl/benzoyltransferase (HCBT) genes. The homeologous BACs were genetically mapped to linkage groups C1 and C2...
  47. Meng Q, Zhang C, Gai J, Yu D. Molecular cloning, sequence characterization and tissue-specific expression of six NAC-like genes in soybean (Glycine max (L.) Merr.). J Plant Physiol. 2007;164:1002-12 pubmed publisher
    ..In this study, six NAC-like genes from soybean, designated as GmNAC1-GmNAC6, were cloned and characterized...
  48. Wu Z, Zhao J, Gao R, Hu G, Gai J, Xu G, et al. Molecular cloning, characterization and expression analysis of two members of the Pht1 family of phosphate transporters in Glycine max. PLoS ONE. 2011;6:e19752 pubmed publisher
    ..We cloned two cDNAs from soybean (Glycine max), GmPT1 and GmPT2, which show homology to the phosphate/proton cotransporter PHO84 from the budding yeast ..
  49. Hao Y, Wei W, Song Q, Chen H, Zhang Y, Wang F, et al. Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. Plant J. 2011;68:302-13 pubmed publisher
    ..Previously, we identified multiple NAC genes in soybean (Glycine max). Here, we identify the roles of two genes, GmNAC11 and GmNAC20, in stress responses and other processes...
  50. Vazquez Tello A, Whittier R, Kawasaki T, Sugimoto T, Kawamura Y, Shibata D. Sequence of a soybean (Glycine max L.) phosphoenolpyruvate carboxylase cDNA. Plant Physiol. 1993;103:1025-6 pubmed
  51. Nagamatsu A, Masuta C, Matsuura H, Kitamura K, Abe J, Kanazawa A. Down-regulation of flavonoid 3'-hydroxylase gene expression by virus-induced gene silencing in soybean reveals the presence of a threshold mRNA level associated with pigmentation in pubescence. J Plant Physiol. 2009;166:32-9 pubmed publisher
    ..Two loci have been identified as controlling pigmentation in soybean pubescence...
  52. Xia Z, Watanabe S, Yamada T, Tsubokura Y, Nakashima H, Zhai H, et al. Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci U S A. 2012;109:E2155-64 pubmed publisher
    ..The maturity locus E1 has a large impact on flowering time in soybean, but the molecular basis for the E1 locus is largely unknown...
  53. Reid D, Li D, Ferguson B, Gresshoff P. Structure-function analysis of the GmRIC1 signal peptide and CLE domain required for nodulation control in soybean. J Exp Bot. 2013;64:1575-85 pubmed publisher
    ..nitrate-induced and acting locally) and GmRIC1 (Bradyrhizobium-induced and acting systemically) suppresses soybean nodulation dependent on the activity of the nodulation autoregulation receptor kinase (GmNARK)...
  54. Jiang B, Yue Y, Gao Y, Ma L, Sun S, Wu C, et al. GmFT2a polymorphism and maturity diversity in soybeans. PLoS ONE. 2013;8:e77474 pubmed publisher
    ..However, up to now, its role in the diverse patterns of maturation in soybeans has been poorly understood.
  55. Udvardi M, McDermott T, Kahn M. Isolation and characterization of a cDNA encoding NADP(+)-specific isocitrate dehydrogenase from soybean (Glycine max). Plant Mol Biol. 1993;21:739-52 pubmed
    A cDNA that encodes an NADP-specific isocitrate dehydrogenase (IDH) was cloned from a soybean nodule cDNA library by complementation of an Escherichia coli mutant that lacked IDH...
  56. Amarasinghe B, de Bruxelles G, Braddon M, Onyeocha I, Forde B, Udvardi M. Regulation of GmNRT2 expression and nitrate transport activity in roots of soybean (Glycine max). Planta. 1998;206:44-52 pubmed
    A full-length cDNA, GmNRT2, encoding a putative high-affinity nitrate transporter was isolated from a Glycine max (L.) root cDNA library and sequenced...
  57. Zabala G, Vodkin L. Cloning of the pleiotropic T locus in soybean and two recessive alleles that differentially affect structure and expression of the encoded flavonoid 3' hydroxylase. Genetics. 2003;163:295-309 pubmed
    Three loci (I, R, and T) control pigmentation of the seed coats in Glycine max and are genetically distinct from those controlling flower color. The T locus also controls color of the trichome hairs...
  58. Ashfield T, Ong L, Nobuta K, Schneider C, Innes R. Convergent evolution of disease resistance gene specificity in two flowering plant families. Plant Cell. 2004;16:309-18 pubmed
    ..To address this question, we have compared R genes from Glycine max (soybean), Rpg1-b, and Arabidopsis thaliana, RPM1, that mediate recognition of the same type III effector ..
  59. Collados R, Andreu V, Picorel R, Alfonso M. A light-sensitive mechanism differently regulates transcription and transcript stability of omega3 fatty-acid desaturases (FAD3, FAD7 and FAD8) in soybean photosynthetic cell suspensions. FEBS Lett. 2006;580:4934-40 pubmed
    ..These results indicate that FAD7 enzyme availability is not limiting for 18:3 production in darkness. Our data point to an additional post-translational regulatory mechanism that controls the activity of FAD7 in response to light. ..
  60. Takahashi R, Githiri S, Hatayama K, Dubouzet E, Shimada N, Aoki T, et al. A single-base deletion in soybean flavonol synthase gene is associated with magenta flower color. Plant Mol Biol. 2007;63:125-35 pubmed
    The Wm locus of soybean [Glycine max (L.) Merr.] controls flower color. Dominant Wm and recessive wm allele of the locus produce purple and magenta flower, respectively...
  61. Xu W, Sato S, Clemente T, Chollet R. The PEP-carboxylase kinase gene family in Glycine max (GmPpcK1-4): an in-depth molecular analysis with nodulated, non-transgenic and transgenic plants. Plant J. 2007;49:910-23 pubmed publisher
    ..As a sequel to earlier investigations related to PEPC phosphorylation in N(2)-fixing nodules of Glycine max, we now present a detailed molecular analysis of the PpcK multigene family in nodulated soybeans...
  62. Zabala G, Vodkin L. Novel exon combinations generated by alternative splicing of gene fragments mobilized by a CACTA transposon in Glycine max. BMC Plant Biol. 2007;7:38 pubmed
    ..We report results obtained from analysis of RT-PCR derived cDNAs of the Glycine max mutant flower color gene, wp, that contains a 5...
  63. Du Q, Cui W, Zhang C, Yu D. GmRFP1 encodes a previously unknown RING-type E3 ubiquitin ligase in Soybean (Glycine max). Mol Biol Rep. 2010;37:685-93 pubmed publisher
    ..a cDNA clone encoding a novel RING-finger protein, designated as GmRFP1, was isolated and characterized from soybean. GmRFP1 was an intronless gene encoding a predicted protein product of 392 amino acid residues with a molecular ..
  64. Lin Y, Ferguson B, Kereszt A, Gresshoff P. Suppression of hypernodulation in soybean by a leaf-extracted, NARK- and Nod factor-dependent, low molecular mass fraction. New Phytol. 2010;185:1074-86 pubmed publisher
    ..aqueous leaf extracts directly into the petiole of hypernodulating and supernodulating nark mutant plants of Glycine max (soybean)...
  65. Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, et al. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics. 2011;188:395-407 pubmed publisher
    ..In soybean (Glycine max), a flowering quantitative trait locus, FT2, corresponding to the maturity locus E2, was detected in ..
  66. Liu S, Kandoth P, Warren S, Yeckel G, Heinz R, Alden J, et al. A soybean cyst nematode resistance gene points to a new mechanism of plant resistance to pathogens. Nature. 2012;492:256-60 pubmed publisher
    Soybean (Glycine max (L.) Merr.) is an important crop that provides a sustainable source of protein and oil worldwide...
  67. Kamauchi S, Nakatani H, Nakano C, Urade R. Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana. FEBS J. 2005;272:3461-76 pubmed
    ..Plant cells appeared to have a strategy for overcoming ER stress through enhancement of protein folding activity, degradation of unfolded proteins, and regulation of apoptosis, but not regulation of translation. ..
  68. Youn B, Sellhorn G, Mirchel R, Gaffney B, Grimes H, Kang C. Crystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms LOX-1 and LOX-3. Proteins. 2006;65:1008-20 pubmed
    ..In soybean (Glycine max), five vegetative isoforms, VLX-A, VLX-B, VLX-C, VLX-D, VLX-E, and four seed isoforms LOX-1, LOX-2, LOX-3a, LOX-..
  69. Tian Z, Wang X, Lee R, Li Y, Specht J, Nelson R, et al. Artificial selection for determinate growth habit in soybean. Proc Natl Acad Sci U S A. 2010;107:8563-8 pubmed publisher
    Determinacy is an agronomically important trait associated with the domestication in soybean (Glycine max)...
  70. Ping J, Liu Y, Sun L, Zhao M, Li Y, She M, et al. Dt2 is a gain-of-function MADS-domain factor gene that specifies semideterminacy in soybean. Plant Cell. 2014;26:2831-42 pubmed publisher
    Similar to Arabidopsis thaliana, the wild soybeans (Glycine soja) and many cultivars exhibit indeterminate stem growth specified by the shoot identity gene Dt1, the functional counterpart of Arabidopsis TERMINAL FLOWER1 (TFL1)...
  71. Kalinski A, Rowley D, Loer D, Foley C, Buta G, Herman E. Binding-protein expression is subject to temporal, developmental and stress-induced regulation in terminally differentiated soybean organs. Planta. 1995;195:611-21 pubmed
    ..Analysis of cDNA sequences and genomic blots indicates that soybeans (Glycine max L. Merr.) possess a small gene family encoding BiP...
  72. Ma H, McMullen M, Finer J. Identification of a homeobox-containing gene with enhanced expression during soybean (Glycine max L.) somatic embryo development. Plant Mol Biol. 1994;24:465-73 pubmed
    ..the isolation and characterization of a cDNA clone for a homeobox-containing gene expressed in somatic embryos of soybean. The cDNA (Sbh1 for soybean homeobox-containing gene) was isolated using maize Knotted-1 (Kn1) cDNA as a ..
  73. Minor W, Steczko J, Stec B, Otwinowski Z, Bolin J, Walter R, et al. Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution. Biochemistry. 1996;35:10687-701 pubmed
    ..of data collection, low temperature, and synchrotron radiation of short wavelength, the structure of ferrous soybean lipoxygenase L-1, a single chain protein of 839 amino acid residues, has been determined by X-ray crystallography ..
  74. O Grady K, Goekjian V, Naim C, Nagao R, Key J. The transcript abundance of GmGT-2, a new member of the GT-2 family of transcription factors from soybean, is down-regulated by light in a phytochrome-dependent manner. Plant Mol Biol. 2001;47:367-78 pubmed
    A new member of the GT-2 family of transcription factors, GmGT-2, was isolated from soybean while screening a cDNA library with a protein binding site (D1) in the promoter of Aux28, a member of the Aux/IAA family of auxin-responsive ..
  75. Searle I, Men A, Laniya T, Buzas D, Iturbe Ormaetxe I, Carroll B, et al. Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase. Science. 2003;299:109-12 pubmed
    ..Here, we demonstrate that AON in soybean is controlled by the receptor-like protein kinase GmNARK (Glycine max nodule autoregulation receptor kinase), similar to Arabidopsis CLAVATA1 (CLV1)...
  76. Tian A, Wang J, Cui P, Han Y, Xu H, Cong L, et al. Characterization of soybean genomic features by analysis of its expressed sequence tags. Theor Appl Genet. 2004;108:903-13 pubmed
    We analyzed 314,254 soybean expressed sequence tags (ESTs), including 29,540 from our laboratory and 284,714 from GenBank. These ESTs were assembled into 56,147 unigenes. About 76...
  77. Gaude N, Tippmann H, Flemetakis E, Katinakis P, Udvardi M, D rmann P. The galactolipid digalactosyldiacylglycerol accumulates in the peribacteroid membrane of nitrogen-fixing nodules of soybean and Lotus. J Biol Chem. 2004;279:34624-30 pubmed publisher
    ..Digalactosyldiacylglycerol (DGDG), a galactolipid abundant in chloroplasts, was detected in the PBM of soybean (Glycine max) and Lotus japonicus...
  78. Zhang X, Wu X, Findley S, Wan J, Libault M, Nguyen H, et al. Molecular evolution of lysin motif-type receptor-like kinases in plants. Plant Physiol. 2007;144:623-36 pubmed
    ..Two pairs of homeologous regions were identified in soybean (Glycine max) based on microsynteny and fluorescence in situ hybridization...
  79. Zhao L, Luo Q, Yang C, Han Y, Li W. A RAV-like transcription factor controls photosynthesis and senescence in soybean. Planta. 2008;227:1389-99 pubmed publisher
    ..that increased in abundance during short days was constructed by SSH from leaf tissues of a photoperiod sensitive soybean. The proteins predicted to be encoded by the mRNAs were inferred to be involved in diverse functions...
  80. Zhang G, Chen M, Chen X, Xu Z, Guan S, Li L, et al. Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). J Exp Bot. 2008;59:4095-107 pubmed publisher
    ..In soybean (Glycine max L.), however, only a few ERF genes have been studied so far...
  81. Fu D, Ghabrial S, Kachroo A. GmRAR1 and GmSGT1 are required for basal, R gene-mediated and systemic acquired resistance in soybean. Mol Plant Microbe Interact. 2009;22:86-95 pubmed publisher
    ..We show that ETI in soybean requires RAR1 and SGT1 but not HSP90...
  82. Matsuyama A, Yoshimura K, Shimizu C, Murano Y, Takeuchi H, Ishimoto M. Characterization of glutamate decarboxylase mediating gamma-amino butyric acid increase in the early germination stage of soybean (Glycine max [L.] Merr). J Biosci Bioeng. 2009;107:538-43 pubmed publisher
    ..A full-length cDNA encoding glutamate decarboxylase (GmGAD1) was isolated from germinating soybean seeds (Glycine max [L.] Merr.). The GmGAD1 gene had a 1512-bp open reading frame, which encodes 503 amino acids...
  83. Xu M, Brar H, Grosic S, Palmer R, Bhattacharyya M. Excision of an active CACTA-like transposable element from DFR2 causes variegated flowers in soybean [Glycine max (L.) Merr.]. Genetics. 2010;184:53-63 pubmed publisher
    ..An active transposable element was suggested to reside in the W4 locus that governs flower color in soybean. Through biochemical and molecular analyses of several revertants of the w4-m allele, we have shown that the W4 ..
  84. Takahashi R, Benitez E, Oyoo M, Khan N, Komatsu S. Nonsense mutation of an MYB transcription factor is associated with purple-blue flower color in soybean. J Hered. 2011;102:458-63 pubmed publisher
    ..that the recessive allele of the W2 locus generated purple-blue color and high vacuolar pH of flower petals in soybean. The location of W2 gene was reportedly close to simple sequence repeat marker Satt318 in molecular linkage group ..
  85. Qin L, Zhao J, Tian J, Chen L, Sun Z, Guo Y, et al. The high-affinity phosphate transporter GmPT5 regulates phosphate transport to nodules and nodulation in soybean. Plant Physiol. 2012;159:1634-43 pubmed publisher
    ..We show here that inoculation with effective rhizobial strains enhanced soybean (Glycine max) N(2) fixation and P nutrition in the field as well as in hydroponics...
  86. Vodkin L, Rhodes P, Goldberg R. cA lectin gene insertion has the structural features of a transposable element. Cell. 1983;34:1023-31 pubmed
    The single gene Le1, coding for soybean seed lectin, was compared to le1, a naturally occurring mutant allele containing a 3.4 kb insertion within its coding region. Le1 is devoid of introns and produces a 1.0 kb mRNA...
  87. Hong J, Cheong Y, Nagao R, Bahk J, Key J, Cho M. Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene. Plant J. 1995;8:199-211 pubmed
    ..Here the isolation of two soybean cDNA clones, referred to as SGBF-1 and SGBF-2, encoding proteins which bind to the G-box motif is reported...
  88. Yadav N, Wierzbicki A, Aegerter M, Caster C, P rez Grau L, Kinney A, et al. Cloning of higher plant omega-3 fatty acid desaturases. Plant Physiol. 1993;103:467-76 pubmed
    ..cDNAs were used as hybridization probes to isolate cDNAs encoding homologous proteins from developing seeds of soybean and rapeseed...
  89. Guex N, Henry H, Flach J, Richter H, Widmer F. Glyoxysomal malate dehydrogenase and malate synthase from soybean cotyledons (Glycine max L.): enzyme association, antibody production and cDNA cloning. Planta. 1995;197:369-75 pubmed
    In order to investigate a possible association between soybean malate synthase (MS; L-malate glyoxylate-lyase, CoA-acetylating, EC 4.1.3.2) and glyoxysomal malate dehydrogenase (gMDH; (S)-malate: NAD+ oxidoreductase, EC 1.1.1...
  90. Shutov A, Kakhovskaya I, Bastrygina A, Bulmaga V, Horstmann C, M ntz K. Limited proteolysis of beta-conglycinin and glycinin, the 7S and 11S storage globulins from soybean [Glycine max (L.) Merr.]. Structural and evolutionary implications. Eur J Biochem. 1996;241:221-8 pubmed
    The G2 (A2B1a) glycinin subunit from soybean (Glycine max L. Merr.) was purified and renatured to the homohexameric holoprotein. This protein along with purified beta-conglycinin were subjected to limited proteolysis by trypsin...
  91. Considine M, Holtzapffel R, Day D, Whelan J, Millar A. Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol. 2002;129:949-53 pubmed
  92. Costa M, Reis P, Valente M, Irsigler A, Carvalho C, Loureiro M, et al. A new branch of endoplasmic reticulum stress signaling and the osmotic signal converge on plant-specific asparagine-rich proteins to promote cell death. J Biol Chem. 2008;283:20209-19 pubmed publisher
    ..Furthermore, BiP (binding protein) overexpression in soybean prevented activation of the UPR by ER stress inducers, but did not affect activation of NRPs...