Experts and Doctors on plant dna in United States

Summary

Locale: United States
Topic: plant dna

Top Publications

  1. Du C, Caronna J, He L, Dooner H. Computational prediction and molecular confirmation of Helitron transposons in the maize genome. BMC Genomics. 2008;9:51 pubmed publisher
  2. Jack T, Sieburth L, Meyerowitz E. Targeted misexpression of AGAMOUS in whorl 2 of Arabidopsis flowers. Plant J. 1997;11:825-39 pubmed
  3. Adams K, Daley D, Qiu Y, Whelan J, Palmer J. Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants. Nature. 2000;408:354-7 pubmed
  4. Brown J, Pauly G. Increased rates of molecular evolution in an equatorial plant clade: an effect of environment or phylogenetic nonindependence?. Evolution. 2005;59:238-42 pubmed
  5. Sharma Y, Davis K. Isolation of a novel Arabidopsis ozone-induced cDNA by differential display. Plant Mol Biol. 1995;29:91-8 pubmed
    ..Our results suggest that AtOZI1 represents a novel stress-related protein that accumulates in response to the production of active oxygen species. ..
  6. Bomblies K, Wang R, Ambrose B, Schmidt R, Meeley R, Doebley J. Duplicate FLORICAULA/LEAFY homologs zfl1 and zfl2 control inflorescence architecture and flower patterning in maize. Development. 2003;130:2385-95 pubmed
  7. Xiong Y, DeFraia C, Williams D, Zhang X, Mou Z. Deficiency in a cytosolic ribose-5-phosphate isomerase causes chloroplast dysfunction, late flowering and premature cell death in Arabidopsis. Physiol Plant. 2009;137:249-63 pubmed publisher
    ..These results demonstrate that a deficiency in the non-oxidative phase of the cytosolic oxPPP has pleiotropic effects on plant growth and development and causes premature cell death. ..
  8. Hansen D, Dastidar S, Cai Z, Penaflor C, Kuehl J, Boore J, et al. Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Mol Phylogenet Evol. 2007;45:547-63 pubmed
  9. Okada M, Lanzatella C, Saha M, Bouton J, Wu R, Tobias C. Complete switchgrass genetic maps reveal subgenome collinearity, preferential pairing and multilocus interactions. Genetics. 2010;185:745-60 pubmed publisher
    ..The proportion of transmission ratio distorted markers was relatively low, but the male map was more extensively affected by distorted transmission ratios and multilocus interactions, associated with spurious linkages. ..

More Information

Publications98

  1. Sugimoto K, Jiao Y, Meyerowitz E. Arabidopsis regeneration from multiple tissues occurs via a root development pathway. Dev Cell. 2010;18:463-71 pubmed publisher
    ..It thus appears that the ectopic activation of a lateral root development program is a common mechanism in callus formation from multiple organs...
  2. Kathe S, Barrantes Reynolds R, Jaruga P, Newton M, Burrows C, Bandaru V, et al. Plant and fungal Fpg homologs are formamidopyrimidine DNA glycosylases but not 8-oxoguanine DNA glycosylases. DNA Repair (Amst). 2009;8:643-53 pubmed publisher
    ..Surprisingly, the activity of AthFpg1 on an AP site opposite a G was extremely robust with a k(obs) of over 2500min(-1). ..
  3. Chapman M, Pashley C, Wenzler J, Hvala J, Tang S, Knapp S, et al. A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus). Plant Cell. 2008;20:2931-45 pubmed publisher
  4. Shanker S, Salazar R, Taliercio E, Chourey P. Cloning and characterization of full-length cDNA encoding cell-wall invertase from maize. Plant Physiol. 1995;108:873-4 pubmed
  5. Ayella A, Trick H, Wang W. Enhancing lignan biosynthesis by over-expressing pinoresinol lariciresinol reductase in transgenic wheat. Mol Nutr Food Res. 2007;51:1518-26 pubmed
  6. Tek A, Jiang J. The centromeric regions of potato chromosomes contain megabase-sized tandem arrays of telomere-similar sequence. Chromosoma. 2004;113:77-83 pubmed
    ..We also demonstrated that the pSbTC1-related sequences are heavily methylated and are associated with highly condensed centromeric heterochromatin. ..
  7. Soltis D, Buggs R, Barbazuk W, Schnable P, Soltis P. On the origins of species: does evolution repeat itself in polyploid populations of independent origin?. Cold Spring Harb Symp Quant Biol. 2009;74:215-23 pubmed publisher
    ..This methodology is particularly promising for groups such as Tragopogon for which limited genetic and genomic resources are available...
  8. Hong Z, Delauney A, Verma D. A cell plate-specific callose synthase and its interaction with phragmoplastin. Plant Cell. 2001;13:755-68 pubmed
    ..These data also suggest that plant CalS may form a complex with UDP-glucose transferase to facilitate the transfer of substrate for callose synthesis...
  9. Mooney B, Miernyk J, Randall D. Cloning and characterization of the dihydrolipoamide S-acetyltransferase subunit of the plastid pyruvate dehydrogenase complex (E2) from Arabidopsis. Plant Physiol. 1999;120:443-52 pubmed
    ..The results of immunoblot analysis indicate that protein expression was similar in roots and flowers, less similar in leaves, and even less similar in siliques. This is the first report, to our knowledge, describing a plastid E2. ..
  10. Huq E, Al Sady B, Hudson M, Kim C, Apel K, Quail P. Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science. 2004;305:1937-41 pubmed
  11. Cai Z, Guisinger M, Kim H, Ruck E, Blazier J, McMurtry V, et al. Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. J Mol Evol. 2008;67:696-704 pubmed publisher
    ..At least some of this unique DNA may represent horizontal transfer from bacterial genomes. These unusual features provide direction for the development of more complex models of plastid genome evolution...
  12. Krumpelman P, Freyermuth S, Cannon J, Fink G, Polacco J. Nucleotide sequence of Arabidopsis thaliana arginase expressed in yeast. Plant Physiol. 1995;107:1479-80 pubmed
  13. Basset G, Quinlivan E, Ziemak M, Diaz De La Garza R, Fischer M, Schiffmann S, et al. Folate synthesis in plants: the first step of the pterin branch is mediated by a unique bimodular GTP cyclohydrolase I. Proc Natl Acad Sci U S A. 2002;99:12489-94 pubmed
    ..As ripening advances, GCHI expression declines sharply, and folate content drops, suggesting that folate synthesis fails to keep pace with turnover. ..
  14. Kim S, Mejias J, Lubinsky P. Molecular confirmation of the hybrid origin of the critically endangered western Mediterranean endemic Sonchus pustulatus (Asteraceae: Sonchinae). J Plant Res. 2008;121:357-64 pubmed publisher
    ..pustulatus followed by dispersal to the Iberian Peninsula during the Messinian salinity crisis/later Quaternary glaciations is proposed on the basis of biogeographic patterns and calibrated estimations of molecular evolution...
  15. Nole Wilson S, Krizek B. DNA binding properties of the Arabidopsis floral development protein AINTEGUMENTA. Nucleic Acids Res. 2000;28:4076-82 pubmed
    ..We propose a model in which each AP2 repeat of ANT contacts adjacent sites within the consensus sequence. Our results suggest that the AP2 repeat can be utilized in different ways for DNA binding. ..
  16. Paxson Sowders D, Dodrill C, Owen H, Makaroff C. DEX1, a novel plant protein, is required for exine pattern formation during pollen development in Arabidopsis. Plant Physiol. 2001;127:1739-49 pubmed
    ..Based on the structure of DEX1 and the phenotype of dex1 plants, several potential roles for the protein are proposed. ..
  17. Wu Y, Huang Y. Molecular mapping of QTLs for resistance to the greenbug Schizaphis graminum (Rondani) in Sorghum bicolor (Moench). Theor Appl Genet. 2008;117:117-24 pubmed publisher
    ..The markers Xtxp358, Xtxp289, Xtxp67 and Xtxp230 closely flanked the respective QTLs, and can be used in high-throughput marker-assisted selections (MAS) for breeding new resistant parents and producing commercial hybrids. ..
  18. Sargent D, Fernández Fernández F, Rys A, Knight V, Simpson D, Tobutt K. Mapping of A1 conferring resistance to the aphid Amphorophora idaei and dw (dwarfing habit) in red raspberry (Rubus idaeus L.) using AFLP and microsatellite markers. BMC Plant Biol. 2007;7:15 pubmed
    ..These traits are controlled by single genes, denoted (A1) and (dw) respectively...
  19. Nelsen M, Gargas A. Dissociation and horizontal transmission of codispersing lichen symbionts in the genus Lepraria (Lecanorales: Stereocaulaceae). New Phytol. 2008;177:264-75 pubmed
    ..The ability to switch partners may provide benefits similar to genetic recombination, which may have helped this lineage persist. ..
  20. Cuevas H, Staub J, Simon P, Zalapa J, McCreight J. Mapping of genetic loci that regulate quantity of beta-carotene in fruit of US Western Shipping melon (Cucumis melo L.). Theor Appl Genet. 2008;117:1345-59 pubmed publisher
    ..This study provides the initial step for defining the genetic control of QbetaC in melon leading to the development of varieties with enhanced beta-carotene content...
  21. He X, McMahon S, McKeon T, Brandon D. Development of a novel immuno-PCR assay for detection of ricin in ground beef, liquid chicken egg, and milk. J Food Prot. 2010;73:695-700 pubmed
    ..Further optimization of the sandwich IPCR was performed by comparing various antibody combinations. Among the four formats investigated, the pAb-pAb combination yielded the lowest limit of detection (10 fg/ml). ..
  22. Skirpan A, McCubbin A, Ishimizu T, Wang X, Hu Y, Dowd P, et al. Isolation and characterization of kinase interacting protein 1, a pollen protein that interacts with the kinase domain of PRK1, a receptor-like kinase of petunia. Plant Physiol. 2001;126:1480-92 pubmed
    ..In situ hybridization showed that PRK1 and KIP1 transcripts were localized in the cytoplasm of pollen. PRK1-K phosphorylated KIP1-NT (amino acids 1--716), whereas PRK1-K462R only weakly phosphorylated KIP1-NT in vitro. ..
  23. Ulmasov T, Hagen G, Guilfoyle T. Dimerization and DNA binding of auxin response factors. Plant J. 1999;19:309-19 pubmed
    ..Dimerization in at least some cases may dictate which ARF(s) are targeted to AuxREs. ..
  24. Chung T, Suttangkakul A, Vierstra R. The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. Plant Physiol. 2009;149:220-34 pubmed publisher
    ..The description of the maize ATG system now provides a battery of molecular and biochemical tools to study autophagy in this crop under field conditions...
  25. Iovene M, Wielgus S, Simon P, Buell C, Jiang J. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 2008;180:1307-17 pubmed publisher
    ..These results show that the potato and tomato genomes contain more chromosomal rearrangements than those reported previously on the basis of comparative genetic linkage mapping. ..
  26. Cavagnaro P, Chung S, Szklarczyk M, Grzebelus D, Senalik D, Atkins A, et al. Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences. Mol Genet Genomics. 2009;281:273-88 pubmed publisher
    ..Moreover, among eight dicot species used for comparison purposes, carrot BES had highest homology to protein-coding sequences from tomato. This deep-coverage library will aid carrot breeding and genetics. ..
  27. Koo D, Jiang J. Super-stretched pachytene chromosomes for fluorescence in situ hybridization mapping and immunodetection of DNA methylation. Plant J. 2009;59:509-16 pubmed publisher
  28. He Y, Mawhinney T, Preuss M, Schroeder A, Chen B, Abraham L, et al. A redox-active isopropylmalate dehydrogenase functions in the biosynthesis of glucosinolates and leucine in Arabidopsis. Plant J. 2009;60:679-90 pubmed publisher
    ..It provides evidence for the hypothesis that the two pathways share a common origin, and suggests a role for redox regulation of glucosinolate and leucine synthesis in plants. ..
  29. Basset G, Ravanel S, Quinlivan E, White R, Giovannoni J, R beill F, et al. Folate synthesis in plants: the last step of the p-aminobenzoate branch is catalyzed by a plastidial aminodeoxychorismate lyase. Plant J. 2004;40:453-61 pubmed publisher
    ..As shown previously for the ADC synthase transcript, the level of ADC lyase mRNA in the pericarp of tomato fruit falls sharply as ripening advances, suggesting that the expression of these two enzymes is coregulated...
  30. Xu Q, Belcastro M, Villa S, Dinkins R, Clarke S, Downie A. A second protein L-isoaspartyl methyltransferase gene in Arabidopsis produces two transcripts whose products are sequestered in the nucleus. Plant Physiol. 2004;136:2652-64 pubmed
    ..Furthermore, cleaved amplified polymorphic sequences from PIMT2 amplicons determined that ABA preferentially enhances the production of PIMT2omega transcript in leaves and possibly in tissues other than germinating seeds. ..
  31. Huang J, Price R. Estimation of the age of extant Ephedra using chloroplast rbcL sequence data. Mol Biol Evol. 2003;20:435-40 pubmed
    ..Our result is consistent with the current distribution of many Ephedra species in geologically recent habitats and points out difficulties in the identification of older ephedroid pollen fossils with the modern genus Ephedra...
  32. Cai Z, Penaflor C, Kuehl J, Leebens Mack J, Carlson J, dePamphilis C, et al. Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol Biol. 2006;6:77 pubmed
  33. Zhang W, Wang X, Yu Q, Ming R, Jiang J. DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya. Genome Res. 2008;18:1938-43 pubmed publisher
    ..These results suggest that DNA methylation and heterochromatinization play an important role in the early stage of sex chromosome evolution...
  34. Chen Z, Young T, Ling J, Chang S, Gallie D. Increasing vitamin C content of plants through enhanced ascorbate recycling. Proc Natl Acad Sci U S A. 2003;100:3525-30 pubmed publisher
    ..These results demonstrate that the vitamin C content of plants can be elevated by increasing expression of the enzyme responsible for recycling ascorbate...
  35. Zhang W, Lee H, Koo D, Jiang J. Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize. Plant Cell. 2008;20:25-34 pubmed publisher
    ..Our results suggest that DNA methylation plays an important role in epigenetic demarcation of the CEN chromatin. ..
  36. Wu Y, Taliaferro C, Bai G, Anderson M. AFLP analysis of Cynodon dactylon (L.) Pers. var. dactylon genetic variation. Genome. 2004;47:689-96 pubmed
    ..Sampling the full extent of genetic variation in C. dactylon var. dactylon would require extensive germplasm collection in the major geographic regions of its distributional range...
  37. Palaisa K, Morgante M, Williams M, Rafalski A. Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. Plant Cell. 2003;15:1795-806 pubmed
    ..We propose that two independent gain-of-function events associated with insertions into the promoter of the Y1 gene and upregulation of expression in endosperm have been incorporated into yellow maize. ..
  38. Givens R, Lin M, Taylor D, Mechold U, Berry J, Hernandez V. Inducible expression, enzymatic activity, and origin of higher plant homologues of bacterial RelA/SpoT stress proteins in Nicotiana tabacum. J Biol Chem. 2004;279:7495-504 pubmed publisher
    ..Taken together, our findings implicate a direct mode of action of these ppGpp synthetases with regard to plant physiology, namely regulation of chloroplast gene expression in response to plant defense signals...
  39. Gallie D, Young T. The ethylene biosynthetic and perception machinery is differentially expressed during endosperm and embryo development in maize. Mol Genet Genomics. 2004;271:267-81 pubmed publisher
  40. Bai X, Peirson B, Dong F, Xue C, Makaroff C. Isolation and characterization of SYN1, a RAD21-like gene essential for meiosis in Arabidopsis. Plant Cell. 1999;11:417-30 pubmed
    ..These results suggest that different RAD21-like proteins play essential roles in chromosome condensation and pairing during both meiosis and mitosis. ..
  41. Jakse J, Telgmann A, Jung C, Khar A, Melgar S, Cheung F, et al. Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice. Theor Appl Genet. 2006;114:31-9 pubmed
  42. Farmer L, Book A, Lee K, Lin Y, Fu H, Vierstra R. The RAD23 family provides an essential connection between the 26S proteasome and ubiquitylated proteins in Arabidopsis. Plant Cell. 2010;22:124-42 pubmed publisher
    ..Taken together, RAD23 proteins appear to play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS substrates to the 26S proteasome. ..
  43. Rong J, Abbey C, Bowers J, Brubaker C, Chang C, Chee P, et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 2004;166:389-417 pubmed
    ..These data provide new insights into polyploid evolution and represent a foundation for assembly of a finished sequence of the cotton genome. ..
  44. He X, Hsu Y, Pontes O, Zhu J, Lu J, Bressan R, et al. NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes Dev. 2009;23:318-30 pubmed publisher
    ..Our results show that RDM2/NRPD4/NRPE4 is a new component of the RdDM pathway in Arabidopsis and that it functions as part of Pol IV and Pol V. ..
  45. Graham M. The diphenylether herbicide lactofen induces cell death and expression of defense-related genes in soybean. Plant Physiol. 2005;139:1784-94 pubmed publisher
    ..These various results are discussed in the context of singlet oxygen-induced responses and lactofen's potential as a disease resistance-inducing agent...
  46. Filichkin S, Leonard J, Monteros A, Liu P, Nonogaki H. A novel endo-beta-mannanase gene in tomato LeMAN5 is associated with anther and pollen development. Plant Physiol. 2004;134:1080-7 pubmed publisher
    ..These data suggest that the LeMAN5 endo-beta-mannanase is associated with anther and pollen development...
  47. Fu H, Doelling J, Arendt C, Hochstrasser M, Vierstra R. Molecular organization of the 20S proteasome gene family from Arabidopsis thaliana. Genetics. 1998;149:677-92 pubmed
  48. Della Vedova C, Lorbiecke R, Kirsch H, Schulte M, Scheets K, Borchert L, et al. The dominant inhibitory chalcone synthase allele C2-Idf (inhibitor diffuse) from Zea mays (L.) acts via an endogenous RNA silencing mechanism. Genetics. 2005;170:1989-2002 pubmed publisher
    ..Finally, we detected small interfering RNAs (siRNAs) in plants carrying C2-Idf, but not in plants homozygous for the wild-type C2 allele. Together, our results indicate that the inhibitory effect of C2-Idf occurs through RNA silencing...
  49. Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A. Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell. 2005;17:343-60 pubmed
    ..The intergenic space between conserved genes is enlarged up to sixfold in maize compared with rice. Frequently, retroelement insertions create a different sequence environment adjacent to conserved genes. ..
  50. Thelen J, Miernyk J, Randall D. Molecular cloning and expression analysis of the mitochondrial pyruvate dehydrogenase from maize. Plant Physiol. 1999;119:635-44 pubmed
    ..The relative abundance of these proteins in nonphotosynthetic tissues may reflect a high cellular content of mitochondria, a high level of respiratory activity, or an extra plastidial requirement for acetate. ..
  51. Baldwin D, Gurley W. Isolation and characterization of cDNAs encoding transcription factor IIB from Arabidopsis and soybean. Plant J. 1996;10:561-8 pubmed
    ..Phylogeny analysis places the plant proteins into one group nearly equidistant from metazoans, fungi, and Archaebacteria...
  52. Liu Z, Running M, Meyerowitz E. TSO1 functions in cell division during Arabidopsis flower development. Development. 1997;124:665-72 pubmed
    ..Our finding that TSO1 is required for organ formation in floral tissues but not in other tissues indicates that TSO1 may encode a floral-specific cell division component, or that TSO1 function is redundant in nonfloral tissues. ..
  53. Jakse J, Meyer J, Suzuki G, McCallum J, Cheung F, Town C, et al. Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration. Mol Genet Genomics. 2008;280:287-92 pubmed publisher
    ..Our results revealed no evidence for gene-dense regions and indicated that sequencing of methyl-filtered genomic fragments should be an efficient approach to reveal genic sequences in the onion genome...
  54. Brunet J, Holmquist K. The influence of distinct pollinators on female and male reproductive success in the Rocky Mountain columbine. Mol Ecol. 2009;18:3745-58 pubmed publisher
    ..The increase in selfing rate with hawkmoths likely resulted from the abundant pollen available in experimental flowers. Our findings highlighted a new type of pollinator interactions that can benefit a plant species...
  55. Moreira C, Gmitter F, Grosser J, Huang S, Ortega V, Chase C. Inheritance of organelle DNA sequences in a citrus-poncirus intergeneric cross. J Hered. 2002;93:174-8 pubmed
    ..MtDNA sequences in the nuclear genome therefore produced an inheritance pattern that mimics biparental inheritance of mtDNA...
  56. Papa C, Springer N, Muszynski M, Meeley R, Kaeppler S. Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Plant Cell. 2001;13:1919-28 pubmed
    ..No reductions in methylation were observed at CpG or asymmetric sites in heterozygous or homozygous mutant plants. Our research shows that chromomethylase Zmet2 is required for in vivo methylation of CpNpG sequences. ..
  57. Culligan K, Hays J. Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA. Plant Cell. 2000;12:991-1002 pubmed
    ..Thus, AtMSH2*AtMSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts. ..
  58. Williams R, Clark S, Meyerowitz E. Genetic and physical characterization of a region of Arabidopsis chromosome 1 containing the CLAVATA1 gene. Plant Mol Biol. 1999;39:171-6 pubmed
    ..24 kb of genomic DNA was sequenced, including a continuous stretch of 18 kb. In addition to generating clones in this region of chromosome 1, we have analyzed the size, spacing and organization of several contiguous genes. ..
  59. Bhattacharyya S, Pattanaik S, Maiti I. Intron-mediated enhancement of gene expression in transgenic plants using chimeric constructs composed of the Peanut chlorotic streak virus (PClSV) promoter-leader and the antisense orientation of PClSV ORF VII (p7R). Planta. 2003;218:115-24 pubmed
    ..This suggests that this combination of elements can mediate the intron-mediated enhancement (IME) phenomenon. We also demonstrated comparative IME with other heterologous promoters from caulimoviruses. ..
  60. Edwards C, Soltis D, Soltis P. Using patterns of genetic structure based on microsatellite loci to test hypotheses of current hybridization, ancient hybridization and incomplete lineage sorting in Conradina (Lamiaceae). Mol Ecol. 2008;17:5157-74 pubmed publisher
  61. Al Faifi S, Meyer J, Garcia Mas J, Monforte A, Havey M. Exploiting synteny in Cucumis for mapping of Psm: a unique locus controlling paternal mitochondrial sorting. Theor Appl Genet. 2008;117:523-9 pubmed publisher
    ..The cucumber ortholog of Arabidopsis mismatch repair (MSH1) was cloned and it segregated independently of Psm, revealing that this candidate gene is not Psm...
  62. Greene E, Codomo C, Taylor N, Henikoff J, Till B, Reynolds S, et al. Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics. 2003;164:731-40 pubmed
    ..As expected for alkylation of guanine by EMS, >99% of mutations are G/C-to-A/T transitions. A nearest-neighbor bias around the mutated base pair suggests that mismatch repair counteracts alkylation damage. ..
  63. Zhao K, Hurst R, Slater M, Bulleit R. Functional protein expression from a DNA based wheat germ cell-free system. J Struct Funct Genomics. 2007;8:199-208 pubmed
    ..Thus, this efficient cell-free expression system can facilitate both functional and structural proteomics...
  64. He X, Brandon D, Chen G, McKeon T, Carter J. Detection of castor contamination by real-time polymerase chain reaction. J Agric Food Chem. 2007;55:545-50 pubmed
    ..001% (<10 microg of castor acetone powder per gram of beef, corresponding to 0.5 microg of ricin), indicating excellent sensitivity for the assay, well below the threshold for oral toxicity...
  65. Lee H, Neumann P, Macas J, Jiang J. Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice. Mol Biol Evol. 2006;23:2505-20 pubmed
    ..We detected transcripts derived from both strands of the CentO repeats. The CentO transcripts are processed into siRNA, suggesting a potential role of this satellite repeat family in epigenetic chromatin modification. ..
  66. Chung S, Staub J, Chen J. Molecular phylogeny of Cucumis species as revealed by consensus chloroplast SSR marker length and sequence variation. Genome. 2006;49:219-29 pubmed
    ..Combined evidence from previously published studies and data presented herein lend support to the hypothesis that C. hystrix is either a progenitor species of C. sativus or that they at least share a common ancestral lineage...
  67. Koh J, Soltis P, Soltis D. Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae). BMC Genomics. 2010;11:97 pubmed publisher
    ..dubius and T. porrifolius...
  68. Mlotshwa S, Schauer S, Smith T, Mallory A, Herr J, Roth B, et al. Ectopic DICER-LIKE1 expression in P1/HC-Pro Arabidopsis rescues phenotypic anomalies but not defects in microRNA and silencing pathways. Plant Cell. 2005;17:2873-85 pubmed
    ..These data suggest that P1/HC-Pro defects in development do not result from general impairments in small RNA pathways and raise the possibility that DCL1 participates in processes in addition to miRNA biogenesis. ..
  69. Mower J. PREP-Mt: predictive RNA editor for plant mitochondrial genes. BMC Bioinformatics. 2005;6:96 pubmed
    ..The PREP-Mt methodology should be applicable to any system where RNA editing increases protein conservation across species. ..
  70. Somers D, Kim W, Geng R. The F-box protein ZEITLUPE confers dosage-dependent control on the circadian clock, photomorphogenesis, and flowering time. Plant Cell. 2004;16:769-82 pubmed
    ..We also demonstrate that ZTL-dependent delay of flowering is mediated through decreases in CONSTANS and FLOWERING LOCUS T message levels, thus directly linking proteasome-dependent proteolysis to flowering. ..
  71. Clark G, Torres J, Finlayson S, Guan X, Handley C, Lee J, et al. Apyrase (nucleoside triphosphate-diphosphohydrolase) and extracellular nucleotides regulate cotton fiber elongation in cultured ovules. Plant Physiol. 2010;152:1073-83 pubmed publisher
    ..These data indicate that ectoapyrases and extracellular nucleotides play a significant role in regulating cotton fiber growth and that ethylene is a likely downstream component of the signaling pathway...
  72. Ji J, Strable J, Shimizu R, Koenig D, Sinha N, Scanlon M. WOX4 promotes procambial development. Plant Physiol. 2010;152:1346-56 pubmed publisher
    ..The cumulative data suggest that the conserved WOX4 function is to promote differentiation and/or maintenance of the vascular procambium, the initial cells of the developing vasculature...
  73. Sutherland B, Belaj A, Nier S, Cottrell J, P Vaughan S, Hubert J, et al. Molecular biodiversity and population structure in common ash (Fraxinus excelsior L.) in Britain: implications for conservation. Mol Ecol. 2010;19:2196-211 pubmed publisher
    ..The data provide new information which will aid development of appropriate conservation policies for ash and other wind pollinated tree species...
  74. Ren Z, Zheng Z, Chinnusamy V, Zhu J, Cui X, Iida K, et al. RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis. Proc Natl Acad Sci U S A. 2010;107:5669-74 pubmed publisher
  75. Parkinson C, Mower J, Qiu Y, Shirk A, Song K, Young N, et al. Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. BMC Evol Biol. 2005;5:73 pubmed
    ..Only a single case of extensive, mitochondrial-specific rate changes has been described, in the angiosperm genus Plantago...
  76. Sundaram S, Wu S, Ma L, Rathinasabapathi B. Expression of a Pteris vittata glutaredoxin PvGRX5 in transgenic Arabidopsis thaliana increases plant arsenic tolerance and decreases arsenic accumulation in the leaves. Plant Cell Environ. 2009;32:851-8 pubmed publisher
    ..Paradoxically, our results suggest that PvGRX5 from the arsenic hyperaccumulator fern can be used in a novel biotechnological solution to decrease arsenic in crops...
  77. Kim S, Michaels S. SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis. Development. 2006;133:4699-707 pubmed
    ..In suf4 mutants, however, only FLC expression is suppressed. These data are consistent with a model in which SUF4 may act to specifically recruit EFS and the PAF1-like complex to the FLC locus. ..
  78. Sakai H, Medrano L, Meyerowitz E. Role of SUPERMAN in maintaining Arabidopsis floral whorl boundaries. Nature. 1995;378:199-203 pubmed
    ..The putative SUPERMAN protein contains one zinc-finger and a region resembling a basic leucine zipper motif, suggesting a function in transcriptional regulation. ..
  79. Tsukamoto T, Ando T, Watanabe H, Marchesi E, Kao T. Duplication of the S-locus F-box gene is associated with breakdown of pollen function in an S-haplotype identified in a natural population of self-incompatible Petunia axillaris. Plant Mol Biol. 2005;57:141-53 pubmed
    ..This finding lends support to the proposal, based on studies of irradiation-generated pollen-part mutants of solanaceous species, that duplication, but not deletion, of the pollen S, causes breakdown of pollen function...
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